Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18227 188 6e-43 seq33365 122 7e-23 seq48425 87.8 1e-12 >seq18227 Length=276284 Score = 188 bits (208), Expect = 6e-43 Identities = 1128/1796 (63%), Gaps = 47/1796 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || || || || || | ||||| || | ||||||||| || ||| Sbjct 241823 TCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCAGTC 241764 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 ||||| ||| ||| ||||||||||| || || | || ||| | ||||| || || Sbjct 241763 TTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGTTCT 241704 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || ||||| ||||| || || |||||||| || || | || | ||| |||||||| Sbjct 241703 GCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCCTCTATCCGCAGCCATT 241644 Query 65258 TCAATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| | | | | | || |||||||| || || ||||||| | | || Sbjct 241643 TGAAT-AGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCTAATTTCTTG 241585 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCA-CGACGTGCAATAATGCGATTACGCATCG 65375 || || | ||||| | |||| |||||| | || ||||||| ||| ||| | Sbjct 241584 GGGTATATTTTCAATATTTTGGATAGAACCATTGTTATG-AATAATGACATTCTTCAT-G 241527 Query 65376 ACTCTGACCACAAACCCAAATCGA-TAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || | || || || | || | | || | || ||| |||| | ||||| Sbjct 241526 TCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACTTGA 241467 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || |||| || | | || ||||| || || | |||||||| |||||| Sbjct 241466 AATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATGGTTCAAATGATTCA 241407 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 |||| || ||||| || || ||||| ||||||||||| ||||| | ||| | ||| || Sbjct 241406 TTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTGAATTG 241347 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || | || | | || |||| || | | || ||||||||| | | | | | | Sbjct 241346 CGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAA--GATCTGTAG 241289 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGG 65674 | | | |||||| || | ||| || | || |||||| || || | Sbjct 241288 GTGTTTT----GTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTTCG 241233 Query 65675 AAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAA 65734 || || ||| || || || | | || |||| ||| || | || || || || | Sbjct 241232 TAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCATAG 241173 Query 65735 TAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATA 65794 |||||||| ||||| || || |||| | | || | || || || || |||| Sbjct 241172 TAAATGGTTTCGAATATCTGTTGATTCAATAATATCGCTTTCTCACTTTCATAGGGCAGT 241113 Query 65795 CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | ||| |||||||| ||||||||||| || ||||| |||||||| || || | || | | Sbjct 241112 CTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTC 241053 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 | ||| ||| | || || ||||| || ||| | || | ||| ||||| || ||| Sbjct 241052 ATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAA 240993 Query 65915 TTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGAC 65972 || |||| | || | |||| || |||| | ||||| | || |||| Sbjct 240992 TTTTGTGTGATGACTT--TTGATATTTCTTTTAATTTTGTGAAATTATAA-GTTT----- 240941 Query 65973 GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAG 66032 || | |||||| | | || | || || | || || |||| Sbjct 240940 ---------TGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAG 240890 Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 | | || || || || || || |||||||| || || ||||| ||||| || | Sbjct 240889 CCACTTCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCG 240830 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 | || ||||| | |||||| || || | ||||| | || ||||| | |||||| || | Sbjct 240829 TTCCTAAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTG 240770 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA------GAGCGCGTGCCT-TC 66205 | || ||||| ||||||| || || || || | ||| | |||| || | | || Sbjct 240769 TTCCAGTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTC 240710 Query 66206 -ACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 | | || || || |||| ||| || | ||| || | | || || ||| Sbjct 240709 TAACATAATTA---TTCT-CCTT----TTCATATTTTTCATATAAGGCCTCAAACTCTTC 240658 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| || | || | || || || || || ||||||| ||| | |||| Sbjct 240657 TCCCCAGGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATT 240598 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 ||| || | ||| |||| |||||||||||| | ||| || || | || | || Sbjct 240597 ACTTTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGC 240538 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || ||||| |||| ||| || || || || |||||||| || || ||||| Sbjct 240537 ACGAACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATG 240478 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| ||||| | ||| | || || | || | || || ||||| ||||| || Sbjct 240477 CCACGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATA 240418 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 | ||| || || | || | | ||| ||||| || || || || ||||| || Sbjct 240417 TCTAGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGT 240358 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 || | || | | ||| ||| | || || |||| || ||||| ||||| || Sbjct 240357 TCCAGCAATAGTTGTGCCTTTTGCTCTAATGCAATGGACATGCAATCCAATCCCACCAGC 240298 Query 66625 CGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACC 66684 | || || || ||||| | | || |||| || || ||| |||| | Sbjct 240297 AGATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATC 240238 Query 66685 CTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAG 66744 || |||| | | ||||||| | ||| |||||||| ||||| || |||||||| Sbjct 240237 TTTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAG 240178 Query 66745 GGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGC 66804 || || | || || ||||| || | ||||| |||| || || | ||| | || Sbjct 240177 AGTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGC 240118 Query 66805 ATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCC 66860 ||| || | || ||||| || || | || | ||||| || | || || |||| Sbjct 240117 ATCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCC 240062 >seq33365 Length=5281 Score = 122 bits (134), Expect = 7e-23 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||||| || || ||||| ||||| |||||||| || || || || || |||||||| ||| Sbjct 4568 CATTTTATAAAGCATGTCTTGGCCTTCTTTGCTGCCTCTGATGGGATAGTCAATGAAAAT 4509 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | |||| | ||| | || || |||||||| | || || | |||||||| || || Sbjct 4508 CTTGTGGAGAGGTTCTCCCAAGAAGTGCAAGTCACTGAAGCCAGATGTTTCTATGGATTT 4449 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 || ||||||||||||||||| ||||| |||||||| Sbjct 4448 CAAATTGCCATGGAGAATGTTCACTCTGAGATGTA 4414 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||| ||||| || || || | || || ||| |||| || |||||||| | | Sbjct 3761 TTGTTTAATGCTATTGAAACTCTGCCATGCGTAAAGAGGAAGGCAGATTGGGCTCTGCAG 3702 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | | || || ||||| || || |||| |||||||||| | || || Sbjct 3701 TGGATTGCTAGCAAGAGTGCAACTTTTGGAGAGCGTATTG-TGGCATTTGCAGCTGTTGA 3643 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| |||| || ||| ||||| |||| || ||||||||||| || || || || Sbjct 3642 GGGAATATTCTTTTCTGGCAGTTTTGCATCAATATTCTGGTTGAAGAAGCGCGGCCTAAT 3583 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||| || |||| ||||| ||||| || || ||||| || |||| Sbjct 3582 GCCTGGATTGACATTCAGTAATGAATTAATTTCACGAGATGAGG 3539 Score = 100 bits (110), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| ||| ||| |||||||| || ||||| | |||||||| | ||| ||| Sbjct 5055 GAACCCCTTTTGAGAGAAAATCCTCGCCGATTCGTCATTTTCCCCATTAAATATCCCGAT 4996 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| |||||||||||||| |||||||| |||||||| || || || || ||| | Sbjct 4995 ATTTGGGAAATGTACAAAAAGGCTGAAGCTTCTTTCTGGACAGTCGAAGAAGTAGATCTA 4936 Query 61147 TCCAAAGACATGAAT 61161 | ||||| | |||| Sbjct 4935 T-CAAAGGTAAGAAT 4922 >seq48425 Length=361859 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 9146 TTTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCA 9205 |||||| |||||||| || | ||| |||||||||| ||| || ||| || || | Sbjct 40770 TTTGGGACCCATTTATGGATCCCAATGGCGACATTACGGCGCCACGTATATTGACGCCAA 40829 Query 9206 TACGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATA 9265 || || || ||| ||| || | ||||||||||| | ||||| | ||| |||| Sbjct 40830 AACTGATTACACGAACCAGGGAATCGATCAGTTGGCCGAGTGTATACGATTGAT-AAATA 40888 Query 9266 -TGAGCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAACGATTTGGACAAGA 9324 || |||| || ||| | || || ||||| || ||||| || | ||| ||||||||| Sbjct 40889 CGGATCCGAATAATCGTAGAATTATAATGACCGCATGGAACCCCATGGATGTGGACAAGA 40948 Query 9325 TGGTATTGCCGCCATGCCAT 9344 ||| |||| || |||||| Sbjct 40949 TGGCGCTGCCTCCGTGCCAT 40968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397277040977360