Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq57646 246 3e-61 seq40018 123 2e-24 seq28589 111 1e-20 >seq57646 Length=1202957 Score = 246 bits (272), Expect = 3e-61 Identities = 489/712 (69%), Gaps = 18/712 (3%) Strand=Plus/Minus Query 7664 TAGTCATATACGGGTCATTCAGACATTGGGGCCATCCATTCCTGGAATACTTGGAAGGAC 7723 |||| | || || ||||| |||||||||| || || || || || || || |||| | Sbjct 1171644 TAGTAGTGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAGGCC 1171585 Query 7724 TAAAGAAATTAAGAGAACAAACAACATTACCTAAACAGA---TAGACACAGACTATGC-T 7779 | | |||||| || ||||| ||| | |||| ||| | || | | || || | Sbjct 1171584 TTACAAAATTATATGAGCAAACTACACT---TAAAAAGAATATTGATTTAAATTACGCCT 1171528 Query 7780 AACAAACTGGCAAGTGACCTAGCATACATCGTTTTGAAGAATCAATTTGACAAGAACAAA 7839 ||| || || |||||| | |||| ||| || || | |||||||| | | || ||| Sbjct 1171527 CACAG-CTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAA 1171469 Query 7840 AAATGGTTTGTTGATGTCGATCGTCTCCCTCCTGATCACAAGCTTAGAGATAATATTGTA 7899 ||||||||||| || ||| || | || ||||| || || | ||| Sbjct 1171468 AAATGGTTTGTCAATATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACATTAAG 1171409 Query 7900 AACAATACCTGGCCCACTCCCTTCCAAATCAAAGACTTCCAAGATGAGTGGCATCGACTC 7959 || ||||| ||||| |||| | ||||| || || || |||||| ||| Sbjct 1171408 AATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTA 1171349 Query 7960 CCGCTGTCAAAGTGTTTTGAGATTCCAGATGTTGTTGATCCAAGCTTAATTTATGCAGAC 8019 ||| | || || || |||||||| || ||||| | ||||| || ||||||||| |||| Sbjct 1171348 CCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGAT 1171289 Query 8020 AAAAGTCATTCAGTATGCAGGT-CTGAAATTATTGAACATAT---AAAGTCAAACCCTAT 8075 |||||||| || ||| | | | ||| | | || ||||| |||||| ||| || Sbjct 1171288 AAAAGTCACTCT-TATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCT--CCCAAT 1171232 Query 8076 GACACCAATTCCTTCGAAAAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTG 8135 ||||| | || || | || || | ||||||| | | || || ||||| || Sbjct 1171231 -ACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173 Query 8136 GAAAGAATTCCTAACAGAAG-TAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCG 8194 ||| |||||||| | ||||| ||||||| ||| |||| | |||||| | || || | Sbjct 1171172 GAAGGAATTCCTCA-AGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAG 1171114 Query 8195 GGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCAT 8254 | || ||||| || ||||||||||| ||||| ||||| |||||||| |||| ||| ||| Sbjct 1171113 GTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACAT 1171054 Query 8255 GGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTC 8314 || | || || |||||||| ||||| ||||| ||| | |||||| | || | | || | Sbjct 1171053 GGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCAC 1170994 Query 8315 TCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaT 8366 | || || || ||||||||||| |||||| |||| ||||| | ||||| || Sbjct 1170993 TATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq40018 Length=56561 Score = 123 bits (136), Expect = 2e-24 Identities = 323/491 (66%), Gaps = 20/491 (4%) Strand=Plus/Plus Query 8080 CCAATTCCTTCGAAAAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTGGAAA 8139 ||||| | || ||||| | ||||| ||||| || | || || || ||| || |||| | Sbjct 43380 CCAATAACGTCTTAAAAACTTTTAGATACATTCATCACTAGTCGTGTTACCAATTGGAGA 43439 Query 8140 GAATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCTG 8199 | ||| ||| ||| || || |||||||| || | ||| | || || ||| | || Sbjct 43440 AAGTTCTTAAAAGAGGTCAACGACAATGGATTATCACTAGAGGACCTAGTGATCAGATTG 43499 Query 8200 AGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCATGGAAG 8259 | || || |||||||| | |||||||| |||||||| ||| | ||| Sbjct 43500 AAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCAC-------------AAG 43546 Query 8260 CTGA-GAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTCTCTT 8318 || | |||| || || ||||| || || || | |||||| ||| | || | || || Sbjct 43547 CTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTT 43606 Query 8319 CTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGA-TACAT 8377 || | ||||||||||||||||||| |||| | | ||| ||| | | |||| Sbjct 43607 AAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA- 43665 Query 8378 CTAATGGACAAGGGTTAGACGTTTACGACTATATCA----CAATGGCAAATCATATAGAT 8433 | | ||||| | || | ||| || || ||| || ||||||| ||||| Sbjct 43666 CAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725 Query 8434 TATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATG 8493 || ||||||||||| || ||||||| || | | |||| || ||||| ||| ||| Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785 Query 8494 GGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGC 8553 || ||| | || | ||| | | || || ||||| || |||||||| || || Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845 Query 8554 TTGATCTATTA 8564 ||||| || || Sbjct 43846 TTGATTTACTA 43856 >seq28589 Length=6593 Score = 111 bits (122), Expect = 1e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 8872 ATAGAAGAAGGAACAAGAAAACTAGGATTATTGATAAACAAGGACGAAACAATAAAATCT 8931 || ||||| || | || ||| |||| | | || |||| || ||||| || |||| Sbjct 2140 ATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCT 2199 Query 8932 GCAGATTATCTGAATTACGGAAAGGTCCCAATCTTTCGAGGCAAAATCAAGGGACTAGAA 8991 ||||||| |||| ||| || || ||||| | |||||||| || || | |||| |||| Sbjct 2200 GCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAG 2259 Query 8992 TCCAAACGATGGTCAAGAGCTGCCTGCGTATCAAATGATCAACTCCCCACAATTAGCAAT 9051 | ||| |||||||| ||| | ||||| || ||||||||||| ||| | | | ||| Sbjct 2260 ACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAAT 2319 Query 9052 ATATTATCAACTATATCATCCAATGC 9077 || || || ||| |||| || ||||| Sbjct 2320 ATCTTGTCGACTGTATCTTCAAATGC 2345 Score = 80.6 bits (88), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 9652 TTCCCAAGGTTTCTGAGTGAATACAAAGCGGCCACTTACCTAGGAATGACAGAAAGTC-- 9709 ||||| |||| || |||||||| ||| | ||||||||||| ||||| || | |||| Sbjct 2913 TTCCCCCGGTTCCTAAGTGAATATAAATCCGCCACTTACCTGGGAATCACTG--AGTCCT 2970 Query 9710 TGGTTGGACTTTTCCAAAATTCAAAGACCATCAGAAATGTCTTTTCAAGAAGAATGA 9766 | | || | || ||||||||||||| ||||||||||| | || |||| ||||| Sbjct 2971 TCATAGGCTTGTTTGAAAATTCAAAGACAATCAGAAATGTTTGCTCCAGAAAAATGA 3027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41801356460464