Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_032907.1
Length=13109
Score E
Sequences producing significant alignments: (Bits) Value
seq57646 246 3e-61
seq40018 123 2e-24
seq28589 111 1e-20
>seq57646
Length=1202957
Score = 246 bits (272), Expect = 3e-61
Identities = 489/712 (69%), Gaps = 18/712 (3%)
Strand=Plus/Minus
Query 7664 TAGTCATATACGGGTCATTCAGACATTGGGGCCATCCATTCCTGGAATACTTGGAAGGAC 7723
|||| | || || ||||| |||||||||| || || || || || || || |||| |
Sbjct 1171644 TAGTAGTGTATGGATCATTTCGACATTGGGGTCACCCGTTTCTAGAGTATATGCAAGGCC 1171585
Query 7724 TAAAGAAATTAAGAGAACAAACAACATTACCTAAACAGA---TAGACACAGACTATGC-T 7779
| | |||||| || ||||| ||| | |||| ||| | || | | || || |
Sbjct 1171584 TTACAAAATTATATGAGCAAACTACACT---TAAAAAGAATATTGATTTAAATTACGCCT 1171528
Query 7780 AACAAACTGGCAAGTGACCTAGCATACATCGTTTTGAAGAATCAATTTGACAAGAACAAA 7839
||| || || |||||| | |||| ||| || || | |||||||| | | || |||
Sbjct 1171527 CACAG-CTAGCTAGTGACATGGCATTCATTGTGTTACAAGATCAATTTAAAAGAAAGAAA 1171469
Query 7840 AAATGGTTTGTTGATGTCGATCGTCTCCCTCCTGATCACAAGCTTAGAGATAATATTGTA 7899
||||||||||| || ||| || | || ||||| || || | |||
Sbjct 1171468 AAATGGTTTGTCAATATCGCAGGTATTCCAAGAGATCATGTACTCTATGACCACATTAAG 1171409
Query 7900 AACAATACCTGGCCCACTCCCTTCCAAATCAAAGACTTCCAAGATGAGTGGCATCGACTC 7959
|| ||||| ||||| |||| | ||||| || || || |||||| |||
Sbjct 1171408 AATAATACATGGCCAACTCATTCTCAAATAGTTGATTTTGGTGACCGATGGCATGAACTA 1171349
Query 7960 CCGCTGTCAAAGTGTTTTGAGATTCCAGATGTTGTTGATCCAAGCTTAATTTATGCAGAC 8019
||| | || || || |||||||| || ||||| | ||||| || ||||||||| ||||
Sbjct 1171348 CCGTTATCTAAATGCTTTGAGATACCCGATGTAATAGATCCTAGTTTAATTTATTCAGAT 1171289
Query 8020 AAAAGTCATTCAGTATGCAGGT-CTGAAATTATTGAACATAT---AAAGTCAAACCCTAT 8075
|||||||| || ||| | | | ||| | | || ||||| |||||| ||| ||
Sbjct 1171288 AAAAGTCACTCT-TATACTTTTTCAGAATTAAAGGAGCATATCTTAAAGTCT--CCCAAT 1171232
Query 8076 GACACCAATTCCTTCGAAAAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTG 8135
||||| | || || | || || | ||||||| | | || || ||||| ||
Sbjct 1171231 -ACACCTGTCCCATCTCATAAGGTACTCAAGACATTCCTTCAAACAGAAGCCACAAATTG 1171173
Query 8136 GAAAGAATTCCTAACAGAAG-TAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCG 8194
||| |||||||| | ||||| ||||||| ||| |||| | |||||| | || || |
Sbjct 1171172 GAAGGAATTCCTCA-AGAAGATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAG 1171114
Query 8195 GGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCAT 8254
| || ||||| || ||||||||||| ||||| ||||| |||||||| |||| ||| |||
Sbjct 1171113 GTCTAAGAGGGAAAGAAAGAGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACAT 1171054
Query 8255 GGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTC 8314
|| | || || |||||||| ||||| ||||| ||| | |||||| | || | | || |
Sbjct 1171053 GGCAACTCAGGGATTACTTTGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCAC 1170994
Query 8315 TCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaT 8366
| || || || ||||||||||| |||||| |||| ||||| | ||||| ||
Sbjct 1170993 TATTTTCAGGGTTAACTATGGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942
>seq40018
Length=56561
Score = 123 bits (136), Expect = 2e-24
Identities = 323/491 (66%), Gaps = 20/491 (4%)
Strand=Plus/Plus
Query 8080 CCAATTCCTTCGAAAAAAGTCTTAGAGACATTTATAAATACTCCTGCTACAAACTGGAAA 8139
||||| | || ||||| | ||||| ||||| || | || || || ||| || |||| |
Sbjct 43380 CCAATAACGTCTTAAAAACTTTTAGATACATTCATCACTAGTCGTGTTACCAATTGGAGA 43439
Query 8140 GAATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCTG 8199
| ||| ||| ||| || || |||||||| || | ||| | || || ||| | ||
Sbjct 43440 AAGTTCTTAAAAGAGGTCAACGACAATGGATTATCACTAGAGGACCTAGTGATCAGATTG 43499
Query 8200 AGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTCGATTCTTCGCTCTTATGTCATGGAAG 8259
| || || |||||||| | |||||||| |||||||| ||| | |||
Sbjct 43500 AAGGGTAAAGAAAGAGAGTTAAAAAGGATTGGTCGATTTTTCAC-------------AAG 43546
Query 8260 CTGA-GAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTCTCTT 8318
|| | |||| || || ||||| || || || | |||||| ||| | || | || ||
Sbjct 43547 CTTAAGAGAATATTTTGTAATCACCGAGTACCTGATTAAAACACACTATGTATCCCTGTT 43606
Query 8319 CTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGA-TACAT 8377
|| | ||||||||||||||||||| |||| | | ||| ||| | | ||||
Sbjct 43607 AAAAGGTCTCACTATGGCAGATGATCTAACCACACTGACAACAAAGATGATGAACTACA- 43665
Query 8378 CTAATGGACAAGGGTTAGACGTTTACGACTATATCA----CAATGGCAAATCATATAGAT 8433
| | ||||| | || | ||| || || ||| || ||||||| |||||
Sbjct 43666 CAACGGGACAGGATCTAAATAATTATGATCATGTCAGTAGATATAGCAAATCTAATAGAC 43725
Query 8434 TATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATG 8493
|| ||||||||||| || ||||||| || | | |||| || ||||| ||| |||
Sbjct 43726 TAGGAGAAATGGAACAATAATCAAAGGAGACAATCCAACAGTCTGATCTTCCGTGTAATG 43785
Query 8494 GGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGC 8553
|| ||| | || | ||| | | || || ||||| || |||||||| || ||
Sbjct 43786 AGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGAGGACACACGAATTCTTTGAGAAGAGT 43845
Query 8554 TTGATCTATTA 8564
||||| || ||
Sbjct 43846 TTGATTTACTA 43856
>seq28589
Length=6593
Score = 111 bits (122), Expect = 1e-20
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 8872 ATAGAAGAAGGAACAAGAAAACTAGGATTATTGATAAACAAGGACGAAACAATAAAATCT 8931
|| ||||| || | || ||| |||| | | || |||| || ||||| || ||||
Sbjct 2140 ATCGAAGAGAGAGCGAGGAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCT 2199
Query 8932 GCAGATTATCTGAATTACGGAAAGGTCCCAATCTTTCGAGGCAAAATCAAGGGACTAGAA 8991
||||||| |||| ||| || || ||||| | |||||||| || || | |||| ||||
Sbjct 2200 GCAGATTTCCTGAGTTATGGGAAAGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAG 2259
Query 8992 TCCAAACGATGGTCAAGAGCTGCCTGCGTATCAAATGATCAACTCCCCACAATTAGCAAT 9051
| ||| |||||||| ||| | ||||| || ||||||||||| ||| | | | |||
Sbjct 2260 ACTAAAAGATGGTCACGAGTCACTTGCGTGTCCAATGATCAACTGCCCGGATTAGGGAAT 2319
Query 9052 ATATTATCAACTATATCATCCAATGC 9077
|| || || ||| |||| || |||||
Sbjct 2320 ATCTTGTCGACTGTATCTTCAAATGC 2345
Score = 80.6 bits (88), Expect = 2e-11
Identities = 89/117 (76%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 9652 TTCCCAAGGTTTCTGAGTGAATACAAAGCGGCCACTTACCTAGGAATGACAGAAAGTC-- 9709
||||| |||| || |||||||| ||| | ||||||||||| ||||| || | ||||
Sbjct 2913 TTCCCCCGGTTCCTAAGTGAATATAAATCCGCCACTTACCTGGGAATCACTG--AGTCCT 2970
Query 9710 TGGTTGGACTTTTCCAAAATTCAAAGACCATCAGAAATGTCTTTTCAAGAAGAATGA 9766
| | || | || ||||||||||||| ||||||||||| | || |||| |||||
Sbjct 2971 TCATAGGCTTGTTTGAAAATTCAAAGACAATCAGAAATGTTTGCTCCAGAAAAATGA 3027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 41801356460464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |