Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq40018 113 3e-21 >seq40018 Length=56561 Score = 113 bits (124), Expect = 3e-21 Identities = 480/745 (64%), Gaps = 39/745 (5%) Strand=Plus/Plus Query 6076 TATAATCACATACAATTGGGGACTTGGCCGACTCCTAAGCAAATAAAAGATTTTGGAGAC 6135 ||||| || |||| | | |||||||| ||||| || ||||| ||| || || ||| Sbjct 43182 TATAAACATATACGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCGGGGAC 43241 Query 6136 AAATGGCATTTGCTTCCATTGGAAAAATGCTTCGATATACCAGATCTAATAGATCC---C 6192 || ||||| |||| || || || ||||| ||||| ||| | |||||| | | Sbjct 43242 AAGTGGCACATGCTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATGCATCC 43301 Query 6193 AGTAATATATACTCTGACAAGAGTCATTCGATGAATCGTTCT--CAAGTC--ATTTCCTA 6248 | || |||| | || |||| ||| || ||||||||| | || | |||| || Sbjct 43302 ACTATATTATATGCGGATAAGAATCACTCCATGAATCGTAGTACCATATTGGATTTGGTA 43361 Query 6249 TATAAATAAGAGATCACCAGGGTCTATCCCCACTAAGAAAGTACTAGAAACTATGATCAA 6308 | | || ||| ||| | || | || | ||| | |||| || | |||| Sbjct 43362 AGAACAAAAAAGAA----AGGTCCAATAACGTCTTAAAAACTTTTAGATACATTCATCAC 43417 Query 6309 TAGCCCTGCCACCGATTGGAAAGAGTTTTTA---GAGCGTATCGATAAAAGAGGATTAG- 6364 ||| | || ||| |||||| | |||| ||| ||| | ||| || |||||| Sbjct 43418 TAGTCGTGTTACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAAT---GGATTATC 43474 Query 6365 ACTGGGAAGAATTGATTATAGGATTAAAAGAGAAGGAAAGAGAACTAAAGGAGGAT-GGT 6423 ||| | | || | | || |||| || | || |||||||| |||| ||||| ||| Sbjct 43475 ACTAG-AGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAA-AGGATTGGT 43532 Query 6424 AGATTCTACTGCCTAATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTATTTG 6483 |||| | | | | ||| || ||||||||||| |||| ||||| || Sbjct 43533 CGATTTTTCAC----AAG--------CTTAAGAGAATATTTTGTAATCACCGAGTACCTG 43580 Query 6484 ATTAAATTACATTTTATTCCTCTTTTTAAGGGTCTGACTGTCGCTGATGACATGACAACA 6543 |||||| ||| | | | | || || || ||||| ||| | || ||||| | || ||| Sbjct 43581 ATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACA 43640 Query 6544 CTAATCAAGAAGATGATGGATAATTCTTCAGGACAAGGAT-TAGATGATTAT--TCCAG- 6599 || | | ||||||||| | | | | |||| ||||| || || ||||| || | Sbjct 43641 CTGACAACAAAGATGATGAACTACACAACGGGAC-AGGATCTAAATAATTATGATCATGT 43699 Query 6600 -AGTTTCTTATGCGAACCATTTAGATTATGAGAAGTGGAATAACTATCAGCGTATAGAAT 6658 ||| | || || | |||| || ||||| ||||| || |||| | | | ||| Sbjct 43700 CAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAAT 43759 Query 6659 CCAACGGGCCTACATTCAGAGTAATGGGACAGTTTTTGGGTTATCCTAACCTAATATACA 6718 ||||| | | | ||| | |||||| | ||| ||||| | ||| || |||| | | Sbjct 43760 CCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGA 43819 Query 6719 GAACTCATGAATTCTTTCAAAAATCTGTGATCTATTATACTCAAAGACCAGATCTAATGA 6778 | || || ||||||||| | || | |||| || ||| | | | ||| ||||| |||| Sbjct 43820 GGACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGATGA 43879 Query 6779 TGGTAAAAGACAATAAGATAATCAA 6803 |||| |||| ||| | || |||| Sbjct 43880 GGGTAGAAGATGATATGCTATTCAA 43904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36122780713856