Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_033006.1
Length=11332
Score E
Sequences producing significant alignments: (Bits) Value
seq40018 113 3e-21
>seq40018
Length=56561
Score = 113 bits (124), Expect = 3e-21
Identities = 480/745 (64%), Gaps = 39/745 (5%)
Strand=Plus/Plus
Query 6076 TATAATCACATACAATTGGGGACTTGGCCGACTCCTAAGCAAATAAAAGATTTTGGAGAC 6135
||||| || |||| | | |||||||| ||||| || ||||| ||| || || |||
Sbjct 43182 TATAAACATATACGAGATGACACTTGGCCAACTCCGAAACAAATCCTAGACTTCGGGGAC 43241
Query 6136 AAATGGCATTTGCTTCCATTGGAAAAATGCTTCGATATACCAGATCTAATAGATCC---C 6192
|| ||||| |||| || || || ||||| ||||| ||| | |||||| | |
Sbjct 43242 AAGTGGCACATGCTCCCCCTGACGCCTTGTTTCGAGATACCTGATATGATAGATGCATCC 43301
Query 6193 AGTAATATATACTCTGACAAGAGTCATTCGATGAATCGTTCT--CAAGTC--ATTTCCTA 6248
| || |||| | || |||| ||| || ||||||||| | || | |||| ||
Sbjct 43302 ACTATATTATATGCGGATAAGAATCACTCCATGAATCGTAGTACCATATTGGATTTGGTA 43361
Query 6249 TATAAATAAGAGATCACCAGGGTCTATCCCCACTAAGAAAGTACTAGAAACTATGATCAA 6308
| | || ||| ||| | || | || | ||| | |||| || | ||||
Sbjct 43362 AGAACAAAAAAGAA----AGGTCCAATAACGTCTTAAAAACTTTTAGATACATTCATCAC 43417
Query 6309 TAGCCCTGCCACCGATTGGAAAGAGTTTTTA---GAGCGTATCGATAAAAGAGGATTAG- 6364
||| | || ||| |||||| | |||| ||| ||| | ||| || ||||||
Sbjct 43418 TAGTCGTGTTACCAATTGGAGAAAGTTCTTAAAAGAGGTCAACGACAAT---GGATTATC 43474
Query 6365 ACTGGGAAGAATTGATTATAGGATTAAAAGAGAAGGAAAGAGAACTAAAGGAGGAT-GGT 6423
||| | | || | | || |||| || | || |||||||| |||| ||||| |||
Sbjct 43475 ACTAG-AGGACCTAGTGATCAGATTGAAGGGTAAAGAAAGAGAGTTAAAA-AGGATTGGT 43532
Query 6424 AGATTCTACTGCCTAATGTCCTGGGCCTTGAGGGAATATTTTGTCGTCACTGAGTATTTG 6483
|||| | | | | ||| || ||||||||||| |||| ||||| ||
Sbjct 43533 CGATTTTTCAC----AAG--------CTTAAGAGAATATTTTGTAATCACCGAGTACCTG 43580
Query 6484 ATTAAATTACATTTTATTCCTCTTTTTAAGGGTCTGACTGTCGCTGATGACATGACAACA 6543
|||||| ||| | | | | || || || ||||| ||| | || ||||| | || |||
Sbjct 43581 ATTAAAACACACTATGTATCCCTGTTAAAAGGTCTCACTATGGCAGATGATCTAACCACA 43640
Query 6544 CTAATCAAGAAGATGATGGATAATTCTTCAGGACAAGGAT-TAGATGATTAT--TCCAG- 6599
|| | | ||||||||| | | | | |||| ||||| || || ||||| || |
Sbjct 43641 CTGACAACAAAGATGATGAACTACACAACGGGAC-AGGATCTAAATAATTATGATCATGT 43699
Query 6600 -AGTTTCTTATGCGAACCATTTAGATTATGAGAAGTGGAATAACTATCAGCGTATAGAAT 6658
||| | || || | |||| || ||||| ||||| || |||| | | | |||
Sbjct 43700 CAGTAGATATAGCAAATCTAATAGACTAGGAGAAATGGAACAATAATCAAAGGAGACAAT 43759
Query 6659 CCAACGGGCCTACATTCAGAGTAATGGGACAGTTTTTGGGTTATCCTAACCTAATATACA 6718
||||| | | | ||| | |||||| | ||| ||||| | ||| || |||| | |
Sbjct 43760 CCAACAGTCTGATCTTCCGTGTAATGAGTGCGTTCTTGGGGTGTCCGAATTTAATTGAGA 43819
Query 6719 GAACTCATGAATTCTTTCAAAAATCTGTGATCTATTATACTCAAAGACCAGATCTAATGA 6778
| || || ||||||||| | || | |||| || ||| | | | ||| ||||| ||||
Sbjct 43820 GGACACACGAATTCTTTGAGAAGAGTTTGATTTACTATGCCGATAAACCTGATCTGATGA 43879
Query 6779 TGGTAAAAGACAATAAGATAATCAA 6803
|||| |||| ||| | || ||||
Sbjct 43880 GGGTAGAAGATGATATGCTATTCAA 43904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 36122780713856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |