Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq57646 104 2e-18 seq28589 86.0 5e-13 >seq57646 Length=1202957 Score = 104 bits (114), Expect = 2e-18 Identities = 408/633 (64%), Gaps = 39/633 (6%) Strand=Plus/Minus Query 7570 AAAAAGA-TATTGATGAATCTTATGCCGAAATGTTAGCAAGTGACTTAGCTTATATTGTA 7628 ||||||| ||||||| | ||| ||| | | |||| |||||| | || | ||||| Sbjct 1171555 AAAAAGAATATTGATTTAAATTACGCCTCACAGCTAGCTAGTGACATGGCATTCATTGTG 1171496 Query 7629 CTTGAAGACCAATTCAAGaaaaagaaaaaaTGGTTTGTCAACTTGGAAGAACTCCCACGA 7688 | |||| ||||| || | ||||||||||||||||||||| | | || | ||| || Sbjct 1171495 TTACAAGATCAATTTAAAAGAAAGAAAAAATGGTTTGTCAATATCGCAGGTATTCCAAGA 1171436 Query 7689 GACCATCACTTGTAT---CCCTTTGTCAAATCACAA-ACCTGGCCTACTGCCAATATTAT 7744 || ||| | ||| | | || || | || || ||||| ||| || | | | Sbjct 1171435 GATCATGTACTCTATGACCACATT----AAGAATAATACATGGCCAACT--CATTCTCAA 1171382 Query 7745 TGAG--GATTTTGGAGACAATTGGCATAAACTCCCATTGATTAAGGCGTTTGAGATCCCT 7802 || |||||||| ||| |||||| |||| || || ||| |||||||| || Sbjct 1171381 ATAGTTGATTTTGGTGACCGATGGCATGAACTACCGTTATCTAAATGCTTTGAGATACCC 1171322 Query 7803 GATGTTATAGATCCTTCCATTATATATTCCGATAGAAGTCATTCA-AT---------GAA 7852 ||||| ||||||||| | || ||||| |||| |||||| || || ||| Sbjct 1171321 GATGTAATAGATCCTAGTTTAATTTATTCAGATAAAAGTCACTCTTATACTTTTTCAGAA 1171262 Query 7853 TAGAAGTGAGATTATCAACCATTTAAACAAGAATCCCACAAAACCAATTCCCACaaaaaa 7912 | ||| ||| |||| ||||| | ||||| | ||| | || | | || Sbjct 1171261 TTAAAG-GAGCATATC------TTAAA---GTCTCCCAATACACCTGTCCCATCTCATAA 1171212 Query 7913 aGTGTTAAAAACCTTATTG---AGTGAACCCGCTACTGACTGGAAAGAATTTTTAAAAGC 7969 || | || || || | | ||| || | | | ||||| ||||| | || Sbjct 1171211 GGTACTCAAGACATTCCTTCAAACAGAAGCCACAAAT---TGGAAGGAATTCCTCAAGAA 1171155 Query 7970 AATTAATGATGTCGGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCG 8029 || |||||| | |||||| | || |||| || || || || | || || || | Sbjct 1171154 GATAAATGATTTTGGATTAGAGTTAGAGCATTTAGTTATAGGTCTAAGAGGGAAAGAAAG 1171095 Query 8030 GGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTT 8089 ||| | |||| | ||| | ||||| || | ||| | ||| | || || || || || Sbjct 1171094 AGAAATAAAAAGATTAGGTAGATTCTTCTCTCTGATGACATGGCAACTCAGGGATTACTT 1171035 Query 8090 TGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGATTAACAAT 8149 ||||||||| || ||||| || |||| ||| | || || |||| || ||||| || Sbjct 1171034 TGTAATAACAGAGTATCTTATTAAAATTCACTATATTCCACTATTTTCAGGGTTAACTAT 1170975 Query 8150 GGCTGATGACTTAGTTACTGTTATGAGAAAAAT 8182 ||| ||||| ||| | | ||||||| ||| || Sbjct 1170974 GGCCGATGATTTAAATTCAGTTATGAAAAAGAT 1170942 >seq28589 Length=6593 Score = 86.0 bits (94), Expect = 5e-13 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 8702 GAGATTAGGATTGATTATAAATAGAGATGAAACAATGCAAAGTGCTGATTACCTGAATTA 8761 || |||||| | || || || ||||||||||| |||| | ||| |||| ||||| ||| Sbjct 2157 GAAATTAGGTCTTATAATCAACAGAGATGAAACTATGCGATCTGCAGATTTCCTGAGTTA 2216 Query 8762 TGGCAAGATTCCCT-TCTTTAGGGGGAATTTGAGAAATCTTGAAACCAAACGATGGTCTA 8820 ||| || | ||||| | ||| | || || | || | || || ||| ||||||| Sbjct 2217 TGGGAA-AGTCCCTGTATTTCGAGGAAACATTAGGGGATTAGAGACTAAAAGATGGTCAC 2275 Query 8821 GAGTCACTTGCGTCACCAATGATCAA 8846 ||||||||||||| ||||||||||| Sbjct 2276 GAGTCACTTGCGTGTCCAATGATCAA 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41456774891504