Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1522324 174 3e-41 seq1153366 158 2e-36 seq261286 118 2e-24 seq2750283 104 4e-20 seq2369536 80.6 5e-13 >seq1522324 Length=523 Score = 174 bits (192), Expect = 3e-41 Identities = 150/182 (82%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||||||||| | ||||| | || ||||| |||||||||| Sbjct 345 TTTACTTTGAAAAAATTAGAGTGTTTCAGGCAGGTAATGGCCAGAATATCTTAGCATGGA 404 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||||| | ||||| ||||| |||||| | | | | ||||||||||| Sbjct 405 ATAATGGAATAGGACTTT-GGTTC-ATTTTATTGGTTATT-GAATCAGAGTAATGATTAA 461 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||| ||||| | |||||| ||||||||||||||||||||||||||||||| | Sbjct 462 TAGGGACAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATTAA 521 Query 254 AG 255 || Sbjct 522 AG 523 >seq1153366 Length=443 Score = 158 bits (174), Expect = 2e-36 Identities = 153/193 (79%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTA 185 |||||||||||| ||||||||| | |||||||||||||||||||| | || || ||| Sbjct 428 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTA 370 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 369 ATGATTAAGAGGGACAGACGGGGGCATTCGTATTGCGACGCTAGAGGTGAAATTCTTGGA 310 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| ||||||||||||||| || ||||| |||||| ||||||||| ||| Sbjct 309 CCGTCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTCCATTAATCA-AGAA 251 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 250 CGAAAGTTAGAGG 238 >seq261286 Length=326 Score = 118 bits (130), Expect = 2e-24 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 136 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 77 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 76 GGGATAACATCATAGGA-TTTCGGTCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGAT 18 Query 191 TAATAGGGATAGTCGGG 207 ||| ||||| ||||||| Sbjct 17 TAACAGGGACAGTCGGG 1 >seq2750283 Length=8957 Score = 104 bits (114), Expect = 4e-20 Identities = 203/295 (69%), Gaps = 19/295 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| | | |||| ||| | ||| | || ||||| ||||| |||| |||||| || Sbjct 7944 TGCTCTTCGCCGAGTGTCCCGCGCGGCCGGCACGTTTACCTTGAACAAATAAGAGTGCTC 7885 Query 100 AAAGCAGGC------------CTTTGCTCGAATACATTA--GCATGGAATAATAGAATAG 145 || |||||| || ||| |||| | || | |||||||||||| || || Sbjct 7884 AAGGCAGGCTACTCTTCAAACCTATGCCCGAA-AGATAACTGCATGGAATAATGAAAAAG 7826 Query 146 GACGTGCGGTTCTATTT-TGTTGGTTTCTAGG-ACCGCCGTAATGATTAATAGGGATAGT 203 || | |||| |||| || | | ||| || |||| ||||||| || || || || Sbjct 7825 GATCT-CGGTCTCATTTCTGATTGGCTCTGGGGACCGAGATAATGATAAAAAGAGACTGT 7767 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| || ||| | | |||||||||||||| || | ||| ||| | Sbjct 7766 CGGGGGCATCCGTACTACGACGCGAGAGGTGAAATTCTATGACCGTCGTAGGACGAACAA 7707 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | |||||||| || ||||| |||| |||||| |||| ||||||||||||| || Sbjct 7706 CAGCGAAAGCATTTGCCAAGAATGTCTTCATTGATCA-AGAACGAAAGTTAGAGG 7653 >seq2369536 Length=1149 Score = 80.6 bits (88), Expect = 5e-13 Identities = 196/292 (67%), Gaps = 19/292 (7%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 |||||||| | |||| ||| | ||| | || |||| ||||| |||| |||||| || Sbjct 413 TGCCCTTCGCCAAGTGTCCCGCGCGGCCGGCACGTTTAACTTGAACAAATAAGAGTGCTC 472 Query 100 AAAGCAGGC------------CTTTGCTCGAATACATTA--GCATGGAATAATAGAATAG 145 || |||||| || ||| |||| | || | ||| |||||||| || || Sbjct 473 AAGGCAGGCTCCTCTTCAAACCTATGCCCGAA-AGATAACTGCAAGGAATAATGTAAAAG 531 Query 146 GACGTGCGGTTCTATTT-TGTTGGTTTCTAGG-ACCGCCGTAATGATTAATAGGGATAGT 203 || | |||| |||| || | | ||| || |||| ||||||| || || | || Sbjct 532 GATCT-CGGTCTCATTTCTGATTGGCTCTGGGGACCGAGATAATGATAAAAAGAAACTGT 590 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 | ||||| || | | | | |||||||||||||| || ||||| ||| | Sbjct 591 CTGGGGTATCCATTCTAAGACGCGAGAGGTGAAATTCTATGACCGTCGTAAGACCAACAA 650 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | |||||||| || ||||| ||| |||||| |||| |||||| |||||| Sbjct 651 CAGCGAAAGCATTTGCCAAGAATGACTTCATTGATCA-AGAACGATAGTTAG 701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 890025483776