Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2732095 248 7e-61 seq2683473 104 2e-17 seq2129313 104 2e-17 seq177455 91.5 1e-13 >seq2732095 Length=3591 Score = 248 bits (274), Expect = 7e-61 Identities = 509/750 (68%), Gaps = 19/750 (3%) Strand=Plus/Plus Query 61191 ACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 |||||||||| |||||| |||| || || || ||||| || || || || ||||| || Sbjct 1032 ACATTTCATTTCCCATGTGCTGGCATTTTTCGCTGCTTCTGATGGGATTGTTAATGAAAA 1091 Query 61251 TTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTT 61310 | | | || | ||| || || || ||||| | || || | || || || || || Sbjct 1092 TCTTGTCGAGAGATTCTGCCAAGAAGTTCAAGTTCCAGAAGCAAGATGCTTTTATGGTTT 1151 Query 61311 CCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 ||| ||||| ||||| ||| ||||| || ||||||||| | |||||| | || ||||| Sbjct 1152 CCAAATTGCAATGGAAAATATCCACAGTGAAATGTACAGTTTACTCATCAACACCTACAT 1211 Query 61371 CAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAA 61430 ||| || | |||| | || ||||||||||| | ||||| | || || || Sbjct 1212 CAGAGACTCTGAAGAACAAAATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAA 1271 Query 61431 GCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACG 61490 ||| || || ||||| | | ||||| || | ||| |||| | || |||||| Sbjct 1272 AAAGAAGGCTGACTGGGCTCTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACG 1331 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 | | || ||||| | || || ||| | || ||||| || || ||||| || ||||| Sbjct 1332 TATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTT 1391 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 |||| | ||||||||||| || ||||| ||||| ||||| |||||||| || || || | Sbjct 1392 TTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAG 1451 Query 61611 CGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCG 61670 || || || | || ||| ||||| | | | ||||| | || |||| || Sbjct 1452 GGATGAAGGTCTTCACACTGACTTTGCCTGTCTCATGTTCAAGC---ATTTGGTAAACAA 1508 Query 61671 TCC--GTCGGAGGAGCGTGTGGGTGAG---ATTGTTCGTGAGGCGGTAACTATCGAACAG 61725 || ||| | ||| ||| | || || || ||| || || | || ||||| Sbjct 1509 GCCTAGTC--AACAGCATGT---TCAGTCTATCATTGATGATGCCGTCAAAATTGAACAA 1563 Query 61726 GAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785 ||||| | ||||| ||| |||| ||| ||||| || ||||| |||| || ||| | Sbjct 1564 GAATTCTTAACTGATGCTCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTATGAGG 1623 Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA-TTTGGGTATG--AAGCGGATC 61842 || || |||||||||||||| || ||||| | || || | || | || |||| | Sbjct 1624 CAATACATTGAATTTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGC---TT 1680 Query 61843 TATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAAT 61902 || ||| | | || |||||||| |||||||| | || || || || || || || || Sbjct 1681 TACAATGCAGAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAAC 1740 Query 61903 TTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || || || || | |||||||| || ||| Sbjct 1741 TTCTTTGAAAAGAGAGTAGGCGAGTACCAA 1770 >seq2683473 Length=2397 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| ||||| | | |||||| |||||||| ||||| |||||| || ||||| Sbjct 1574 TACCTCATCAGGGGATGAATACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGT 1633 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 |||||||||||||| || ||||| | |||||||||||| ||||| | |||||| || || Sbjct 1634 ACCCAAATTCTGTTGGTTGCTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGT 1693 Query 66154 GCCGGTCTCAAC 66165 || || || || Sbjct 1694 TCCAGTTTCCAC 1705 >seq2129313 Length=838 Score = 104 bits (114), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 66022 GTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACT 66081 ||| ||||| || ||| ||||| | | |||||| |||||||| ||||| |||||| Sbjct 831 GTTTCAGACT--TACCTCATCAGGGGATGAATACTCAACAATTTCTGTGCAGAGATTAGA 774 Query 66082 GCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACAT 66141 || ||||| |||||||||||||| || ||||| | |||||||||||| ||||| | Sbjct 773 ACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTATTGCATGCATCTTTGTATAG 714 Query 66142 CATGTACGGAGTGCCGGTCTCAAC 66165 |||||| || || || || || || Sbjct 713 CATGTATGGCGTTCCAGTTTCCAC 690 >seq177455 Length=318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTG-CATAATTCGGCTCGGCCACATGCATAT 65210 |||||||||||||||||| |||| ||| ||| |||| || ||||| || | || || | Sbjct 296 CCAAGCATAGAAATGCATAGATG-TAAGCTTGCCATAGTTAGGCTCAGCAATGTGAATGT 238 Query 65211 TCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGAC 65270 | | |||||| |||||||| || | ||||||||| |||||||| || | ||| || Sbjct 237 TGAGCGACTGGCTCTGATCAATAAATGCACCACGATCAGCAGCCATCTCCA--GTACCAC 180 Query 65271 GTCC--CGATATCTCCCAGACGGTCTTGTACA 65300 | | || |||||||| || || ||||||| Sbjct 179 TTTCTGAGAGATCTCCCACACAGTTTTGTACA 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384239810103680