Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09]
1,976 sequences; 162,245,578 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq561 140 1e-30
seq488 140 1e-30
seq378 140 1e-30
seq146 77.0 1e-11
>seq561
Length=33869
Score = 140 bits (154), Expect = 1e-30
Identities = 119/144 (83%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| |||||||
Sbjct 16723 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 16664
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
|| | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| |
Sbjct 16663 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 16605
Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || ||||||||
Sbjct 16604 GAGAGAGTTCAAGAGTACGTGAAA 16581
Score = 136 bits (150), Expect = 2e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 15918 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 15859
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||||
Sbjct 15858 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 15799
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 15798 ATAGGGGCGA 15789
>seq488
Length=40361
Score = 140 bits (154), Expect = 1e-30
Identities = 119/144 (83%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| |||||||
Sbjct 37044 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 37103
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| || ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| |
Sbjct 37104 A-TGACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 37162
Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || ||||||||
Sbjct 37163 GAGAGAGTTCAAGAGGACGTGAAA 37186
Score = 136 bits (150), Expect = 2e-29
Identities = 108/130 (83%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613
||||| || |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 37851 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 37910
Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673
|||||| ||| |||||| || |||| ||||| ||||||||||||||||| | |||||
Sbjct 37911 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 37970
Query 674 ATAGGGGCGA 683
||||||||||
Sbjct 37971 ATAGGGGCGA 37980
>seq378
Length=24228
Score = 140 bits (154), Expect = 1e-30
Identities = 119/144 (83%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| |||||||
Sbjct 8045 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 8104
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| || ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| |
Sbjct 8105 A-TGACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 8163
Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || ||||||||
Sbjct 8164 GAGAGAGTTCAAGAGTACGTGAAA 8187
>seq146
Length=31772
Score = 77.0 bits (84), Expect = 1e-11
Identities = 62/75 (83%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 108 GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTT 167
||||||||||||| ||||||| |||| ||||| ||||||| |||| | | ||||||||
Sbjct 22139 GAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTCGAAGAGAGAGTT 22198
Query 168 AAAAAGCACGTGAAA 182
|| || ||||||||
Sbjct 22199 CAAGAGTACGTGAAA 22213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079957614800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |