Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq561 217 2e-54 seq737 210 3e-52 seq378 170 3e-40 seq488 122 1e-25 >seq561 Length=33869 Score = 217 bits (240), Expect = 2e-54 Identities = 218/292 (75%), Gaps = 47/292 (16%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18466 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 18525 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 18526 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTCG 18583 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | | || ||| |||||| || | ||||| Sbjct 18584 GTAGTAAAAACCGCCCGACCGAAGTCGAGGGCCTTCGAGATACCATGAATTACGCCTATT 18643 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 18644 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 18703 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 18704 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 18755 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 59 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 18392 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA 18439 >seq737 Length=19741 Score = 210 bits (232), Expect = 3e-52 Identities = 220/298 (74%), Gaps = 47/298 (16%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6393 TCCTTCAGTATAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGCTATTG 6452 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 6453 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTCGTACGTCG 6510 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | | | | ||| |||||| || | ||||| Sbjct 6511 GTAGTAAAAACCGATCGACCGAAGTCGAGGGCCTTCGAGATACCATGAATCACGCCTATT 6570 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 6571 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 6630 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 6631 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTCAACCCT 6688 >seq378 Length=24228 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||| Sbjct 4571 CTATTTAGCAGGCTAGAGTCTCGTTCGTTATTGGAATTAACCAGACAAATCGCTCCACCA 4512 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 4511 ACTAAGAACGGCCATTGACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 4455 Score = 159 bits (176), Expect = 6e-37 Identities = 187/262 (71%), Gaps = 47/262 (18%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4833 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 4774 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 4773 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTCG 4716 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | | || ||| |||||| || | ||||| Sbjct 4715 GTAGTAAAAACCGCCCGACCGAAGTCGAGGGCCTTCGAGATACCATGAATTACGCCTATT 4656 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||| |||||||||||||| ||| ||||||||| Sbjct 4655 TAGCAGGCTAGAGTCTCGTTCGTTATCGGACGTAACCAGACAAATCGCTCTACCAACTAA 4596 Query 207 GAACGGCCATGCACCACCACCC 228 |||||||||||||||||||||| Sbjct 4595 GAACGGCCATGCACCACCACCC 4574 >seq488 Length=40361 Score = 122 bits (134), Expect = 1e-25 Identities = 91/104 (88%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34689 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 34630 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| |||||||||||||| Sbjct 34629 -CTCAATC-TCGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAG 34588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796784747256