Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1313 343 3e-92 seq561 250 4e-64 seq1322 84.2 4e-14 seq920 84.2 4e-14 seq1823 82.4 1e-13 >seq1313 Length=6372 Score = 343 bits (380), Expect = 3e-92 Identities = 248/283 (88%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 5716 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 5657 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 5656 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 5597 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5596 AATTTTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 5537 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 5536 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 5477 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 5476 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 5436 >seq561 Length=33869 Score = 250 bits (276), Expect = 4e-64 Identities = 167/185 (90%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 24309 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 24368 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 24369 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 24428 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24429 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 24488 Query 180 TGAAC 184 ||||| Sbjct 24489 TGAAC 24493 >seq1322 Length=110664 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| Sbjct 19847 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGC 19906 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| | ||| | | || | | ||| || ||||||||||||| | || Sbjct 19907 CCAACCCTTGGAAGCGACTACACCTCCAGGATGC---GATGAGCCGACATCGAGGTGCCA 19963 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | |||| ||||||| |||| | | |||| |||||||| | ||||||||| Sbjct 19964 AACCTCCCCGTCTATATGAACTATTGGGAGAGATTAGCCTGTTATCCCCGGGGTAACTTT 20023 Query 224 T 224 | Sbjct 20024 T 20024 >seq920 Length=66673 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| Sbjct 8977 ACCAAACTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGC 8918 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| | ||| | | || | | ||| || ||||||||||||| | || Sbjct 8917 CCAACCCTTGGAAGCGACTACACCTCCAGGATGC---GATGAGCCGACATCGAGGTGCCA 8861 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | |||| ||||||| |||| | | |||| |||||||| | ||||||||| Sbjct 8860 AACCTCCCCGTCTATATGAACTATTGGGAGAGATTAGCCTGTTATCCCCGGGGTAACTTT 8801 Query 224 T 224 | Sbjct 8800 T 8800 >seq1823 Length=2505 Score = 82.4 bits (90), Expect = 1e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||||| || | | ||| |||||||||||||||||||||||||||||| Sbjct 75 TACTGAGCAGAATTACTATCGCAACAACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 16 Query 60 ATGACGGTCTAAACC 74 | |||||||||| || Sbjct 15 ACGACGGTCTAAGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854383117056