Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1322 215 1e-53 seq920 215 1e-53 >seq1322 Length=110664 Score = 215 bits (238), Expect = 1e-53 Identities = 259/346 (75%), Gaps = 16/346 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||| | || |||||||||||| || ||||||||||||||| Sbjct 24039 CTTTACAATCCGAAGACCTTCAT-CAGTCACGCGGCATTG-CTCCATCAGGCTTTCGCCC 24096 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| Sbjct 24097 ATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAA 24156 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||||||||||||| | | |||| ||||| ||||||| ||||||||||| | Sbjct 24157 TGTGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTA 24216 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCC---CCTG 237 |||||||| |||| || | | | |||| ||||| ||| | | | ||| | | Sbjct 24217 CCAACTAGTTAATGCGGCGCATCCCCATCAATTAGCG-AAG--CAAATGCTCCTTTCATT 24273 Query 238 CTTTCTC-------CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 ||| || | || |||||||||||||| ||||||| | ||||| || Sbjct 24274 ATTTATCATTGCAAATAAATAACATATGCGGTATTAGCTGTCGTTTCCAACAGTTATTCC 24333 Query 291 CCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || || || | |||||||||||| |||| || Sbjct 24334 CCACTAAATGGTAGGTTAGATACGTGTTACTCACCCGTTCGCCACT 24379 >seq920 Length=66673 Score = 215 bits (238), Expect = 1e-53 Identities = 259/346 (75%), Gaps = 16/346 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||| | || |||||||||||| || ||||||||||||||| Sbjct 5038 CTTTACAATCCGAAGACCTTCAT-CAGTCACGCGGCATTG-CTCCATCAGGCTTTCGCCC 4981 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| Sbjct 4980 ATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAA 4921 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||||||||||||| | | |||| ||||| ||||||| ||||||||||| | Sbjct 4920 TGTGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTA 4861 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCC---CCTG 237 |||||||| |||| || | | | |||| ||||| ||| | | | ||| | | Sbjct 4860 CCAACTAGTTAATGCGGCGCATCCCCATCAATTAGCG-AAG--CAAATGCTCCTTTCATT 4804 Query 238 CTTTCTC-------CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 ||| || | || |||||||||||||| ||||||| | ||||| || Sbjct 4803 ATTTATCATTGCAAATAAATAACATATGCGGTATTAGCTGTCGTTTCCAACAGTTATTCC 4744 Query 291 CCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || || || | |||||||||||| |||| || Sbjct 4743 CCACTAAATGGTAGGTTAGATACGTGTTACTCACCCGTTCGCCACT 4698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071978817280