Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq920 244 3e-62 seq1322 235 1e-59 >seq920 Length=66673 Score = 244 bits (270), Expect = 3e-62 Identities = 298/393 (76%), Gaps = 14/393 (4%) Strand=Plus/Minus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || |||||||||||||| | | | ||||| | ||| |||||||| | Sbjct 7133 TTTTCAACGAACGTTGGTTCGGTCCTCCATTAACT-GTTACATTAACTT-CAACCTGCTC 7076 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 || || |||||| || ||||| |||||||| || | |||| |||||||| | || | Sbjct 7075 AT-GGCTAGATCACCTGGTTT-CGGGTCTACGACC-ACATACTAAACGCCCTATTCAGGC 7019 Query 150 TCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTG 208 ||||||| | || || |||| || ||| | | | |||| | | ||| |||| | Sbjct 7018 TCGCTTT-CACTTCGGCTCCGTCTTTTCAACTTAACCTTGCATGTAATCGTAACTCGCCG 6960 Query 209 ACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCA 268 | |||| ||||||||| |||| |||||||| || | |||||| ||| ||||| ||| Sbjct 6959 GCTCATTCTACAAAAGGCACGCCGTCACCCATTAACG--GGCTCCGACTTGTTGTAAGCA 6902 Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 || |||||||| | |||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct 6901 TATGGTTTCAGAAACTATTTCACTCCCCTCTC-GGGGTACTTTTCACCTTTCCCTCACGG 6843 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT--GGAGGATGGTCCCCCCATA 386 |||| ||||||||||||| | | |||||||||||||| | || ||||| | || | Sbjct 6842 TACTGGTTCACTATCGGTAATTGGTTAGTATTTAGCCTTACGCAG--TGGTCTGCGCAAA 6785 Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||||| ||| | ||||| || | ||||| Sbjct 6784 TTCCGACAAGGTTCCACGTGCCTCGCCGTACTC 6752 >seq1322 Length=110664 Score = 235 bits (260), Expect = 1e-59 Identities = 296/393 (75%), Gaps = 14/393 (4%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || |||||||||||||| | | | ||||| | ||| |||||||| | Sbjct 21691 TTTTCAACGAACGTTGGTTCGGTCCTCCATTAACT-GTTACATTAACTT-CAACCTGCTC 21748 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 || || |||||| || ||||| |||||||| || | |||| |||||||| | || | Sbjct 21749 AT-GGCTAGATCACCTGGTTT-CGGGTCTACGACC-ACATACTAAACGCCCTATTCAGGC 21805 Query 150 TCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTG 208 ||||||| | || | |||| || ||| | | | |||| | | ||| |||| | Sbjct 21806 TCGCTTT-CACTTAGGCTCCGTCTTTTCAACTTAACCTTGCATGTAATCGTAACTCGCCG 21864 Query 209 ACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCA 268 | |||| ||||||||| |||| |||||||| || | |||||| ||| ||||| ||| Sbjct 21865 GCTCATTCTACAAAAGGCACGCCGTCACCCATTAACG--GGCTCCGACTTGTTGTAAGCA 21922 Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 || |||||||| | |||||||||||||||||| ||||| |||||| || ||||||||||| Sbjct 21923 TATGGTTTCAGAAACTATTTCACTCCCCTCTC-GGGGTACTTTTCACCATTCCCTCACGG 21981 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT--GGAGGATGGTCCCCCCATA 386 |||| ||||||||||||| | | |||||||||||||| | || ||||| | || | Sbjct 21982 TACTGGTTCACTATCGGTAATTGGTTAGTATTTAGCCTTACGCAG--TGGTCTGCGCAAA 22039 Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||||| ||| | ||||| || | ||||| Sbjct 22040 TTCCGACAAGGTTCCACGTGCCTCGCCGTACTC 22072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241575465984