Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1322 203 8e-50 seq920 203 8e-50 >seq1322 Length=110664 Score = 203 bits (224), Expect = 8e-50 Identities = 304/428 (71%), Gaps = 43/428 (10%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| |||||| ||||| ||| |||||||||| ||| |||||||||| ||||||| Sbjct 24039 CTTTACAATCCGAAGACCTTCATCAGTCACGCGGCATTGCTCCATCAGGCTTTCGCCCAT 24098 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| || Sbjct 24099 TGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAATG 24158 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||||||||||||| | |||| | ||||| ||| ||| ||||||||| || Sbjct 24159 TGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTACC 24218 Query 184 AACTAGCTAATCCCATCTGGGTTCAT-CCGAT-AGTGAGAGGCCCGAA-GGTCC---CCC 237 |||||| |||| | || ||| || || | | || | | || | ||| | Sbjct 24219 AACTAGTTAATGC------GGCGCATCCCCATCAATTAGCGAAGCAAATGCTCCTTTCAT 24272 Query 238 TCTTTGGTCTTGC-------GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 | ||| |||| | |||||||||||||| |||||||| ||||| | Sbjct 24273 TATTTATCATTGCAAATAAATAACATATGCGGTATTAGCTGTCGTTTCCAACAGTTATTC 24332 Query 291 CCCTCCATCAGGCAGTTTCCCAGACA----TTACTCACCCGTCCGCCACTCGTCAGCGAA 346 ||| | | || || || ||| | |||||||||||| ||||||| || Sbjct 24333 CCCACTAAATGGTAGGTT---AGATACGTGTTACTCACCCGTTCGCCACT--------AA 24381 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 || ||| ||| |||||||||||||||| |||||| ||||||||||||| Sbjct 24382 --AGATTGCTACTT-------TCGTTCGACTTGCATGTATTAGGCATGCCGCCAGCGTTA 24432 Query 407 AATCTGAG 414 | ||||| Sbjct 24433 ATCCTGAG 24440 >seq920 Length=66673 Score = 203 bits (224), Expect = 8e-50 Identities = 304/428 (71%), Gaps = 43/428 (10%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| |||||| ||||| ||| |||||||||| ||| |||||||||| ||||||| Sbjct 5038 CTTTACAATCCGAAGACCTTCATCAGTCACGCGGCATTGCTCCATCAGGCTTTCGCCCAT 4979 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| || Sbjct 4978 TGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAATG 4919 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||||||||||||| | |||| | ||||| ||| ||| ||||||||| || Sbjct 4918 TGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTACC 4859 Query 184 AACTAGCTAATCCCATCTGGGTTCAT-CCGAT-AGTGAGAGGCCCGAA-GGTCC---CCC 237 |||||| |||| | || ||| || || | | || | | || | ||| | Sbjct 4858 AACTAGTTAATGC------GGCGCATCCCCATCAATTAGCGAAGCAAATGCTCCTTTCAT 4805 Query 238 TCTTTGGTCTTGC-------GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCC 290 | ||| |||| | |||||||||||||| |||||||| ||||| | Sbjct 4804 TATTTATCATTGCAAATAAATAACATATGCGGTATTAGCTGTCGTTTCCAACAGTTATTC 4745 Query 291 CCCTCCATCAGGCAGTTTCCCAGACA----TTACTCACCCGTCCGCCACTCGTCAGCGAA 346 ||| | | || || || ||| | |||||||||||| ||||||| || Sbjct 4744 CCCACTAAATGGTAGGTT---AGATACGTGTTACTCACCCGTTCGCCACT--------AA 4696 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 || ||| ||| |||||||||||||||| |||||| ||||||||||||| Sbjct 4695 --AGATTGCTACTT-------TCGTTCGACTTGCATGTATTAGGCATGCCGCCAGCGTTA 4645 Query 407 AATCTGAG 414 | ||||| Sbjct 4644 ATCCTGAG 4637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222375845376