Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1322 311 3e-82 seq920 311 3e-82 >seq1322 Length=110664 Score = 311 bits (344), Expect = 3e-82 Identities = 281/359 (78%), Gaps = 27/359 (8%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||||||||||| |||||||||||| ||||| |||||||| |||||||| Sbjct 24229 ATTAACTAGTTGGTAAGGTAATGGCTTACCAAGGTAACGATGCGTAGCCGATCTGAGAGG 24170 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| |||||||||||| |||||||||||| ||||||| |||||| |||||||||| ||| Sbjct 24169 ATGAACGGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGAAGGCAGCAGTAGGG 24110 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || |||||||||| ||||||||||| ||||| ||||||||| |||||||| |||| Sbjct 24109 AATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGACTGATGAAGGTCTTC 24050 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------------------TAATG 381 || | |||||| ||||| | | |||||| || | Sbjct 24049 GGATTGTAAAGGTCTGTTGTAAGGGAAGAAGTGCTAGAATAGGAAATGATTTTAGTATCG 23990 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 || ||| | | || ||||| |||||||||| |||||||||||||||||||||| |||| Sbjct 23989 ACCATACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGG 23930 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| ||||||||||||| ||| | |||||||||| |||||||| ||||| ||||| Sbjct 23929 TGGCAAGCGTTATCCGGATTTA-TTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTC 23872 >seq920 Length=66673 Score = 311 bits (344), Expect = 3e-82 Identities = 281/359 (78%), Gaps = 27/359 (8%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||||||||||| |||||||||||| ||||| |||||||| |||||||| Sbjct 4848 ATTAACTAGTTGGTAAGGTAATGGCTTACCAAGGTAACGATGCGTAGCCGATCTGAGAGG 4907 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| |||||||||||| |||||||||||| ||||||| |||||| |||||||||| ||| Sbjct 4908 ATGAACGGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGAAGGCAGCAGTAGGG 4967 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || |||||||||| ||||||||||| ||||| ||||||||| |||||||| |||| Sbjct 4968 AATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGACTGATGAAGGTCTTC 5027 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------------------TAATG 381 || | |||||| ||||| | | |||||| || | Sbjct 5028 GGATTGTAAAGGTCTGTTGTAAGGGAAGAAGTGCTAGAATAGGAAATGATTTTAGTATCG 5087 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 || ||| | | || ||||| |||||||||| |||||||||||||||||||||| |||| Sbjct 5088 ACCATACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGG 5147 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| ||||||||||||| ||| | |||||||||| |||||||| ||||| ||||| Sbjct 5148 TGGCAAGCGTTATCCGGATTTA-TTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTC 5205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497570407424