Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1322 358 2e-96 seq920 354 2e-95 >seq1322 Length=110664 Score = 358 bits (396), Expect = 2e-96 Identities = 320/399 (80%), Gaps = 9/399 (2%) Strand=Plus/Minus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||||| |||||||||| |||||||||||||||||||||| |||| ||| |||||||| Sbjct 23976 AGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTAT 23917 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct 23916 CCGGATTTATTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTCTGAGGTTAAATTTAG 23857 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 ||||||||| | || || || |||||| || ||||||| ||||| || ||||| Sbjct 23856 GGGCTCAACCGCTA-ACCGCCTTGGAAACTACATTACTAGAGTATAGGAGAGGTTAGTGG 23798 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| | ||||||||||| ||||||||||||| | ||||||||||||||||||||||| Sbjct 23797 AATTTCATGTGTAGCGGTGGAATGCGTAGATATATGAAGGAACACCAGTGGCGAAGGCGG 23738 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || |||| || | |||||| || ||| ||||||||||||||||||| ||||||||||| Sbjct 23737 CTAACTGGCCTATTACTGACGTTGTGGCACGAAAGCGTGGGGAGCAAATAGGATTAGATA 23678 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 |||| ||||||||||||||||||||||| ||||| |||| | ||| || | | Sbjct 23677 CCCTAGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTTG----CCATGAG----GCAG 23626 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | ||| |||||| |||||| ||| |||| | |||| Sbjct 23625 TGCTGTAGCTAACGCATTAAGTACTCCGCCTGAGTAGTA 23587 >seq920 Length=66673 Score = 354 bits (392), Expect = 2e-95 Identities = 319/399 (80%), Gaps = 9/399 (2%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 || ||||| |||||||||| |||||||||||||||||||||| |||| ||| |||||||| Sbjct 5101 AGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTAT 5160 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTA 129 ||||| ||| ||||||||||| |||||||| ||||| ||||| ||||| ||| Sbjct 5161 CCGGATTTATTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTCTGAGGTTAAATTTAG 5220 Query 130 TGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 ||||||||| | || || || |||||| || ||||||| ||||| || ||||| Sbjct 5221 GGGCTCAACCGCTA-ACCGCCTTGGAAACTACATTACTAGAGTATAGGAGAGGTTAGTGG 5279 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| | ||||||||||| ||||||||||||| | ||||||||||||||||||||||| Sbjct 5280 AATTTCATGTGTAGCGGTGGAATGCGTAGATATATGAAGGAACACCAGTGGCGAAGGCGG 5339 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 || |||| || | |||||| || ||| |||||||||||| |||||| ||||||||||| Sbjct 5340 CTAACTGGCCTATTACTGACGTTGTGGCACGAAAGCGTGGGCAGCAAATAGGATTAGATA 5399 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGG 369 |||| ||||||||||||||||||||||| ||||| |||| | ||| || | | Sbjct 5400 CCCTAGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTTG----CCATGAG----GCAG 5451 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | ||| |||||| |||||| ||| |||| | |||| Sbjct 5452 TGCTGTAGCTAACGCATTAAGTACTCCGCCTGAGTAGTA 5490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203176224768