Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1322 221 4e-55 seq920 221 4e-55 >seq1322 Length=110664 Score = 221 bits (244), Expect = 4e-55 Identities = 390/551 (71%), Gaps = 18/551 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||| | ||| |||||| ||| ||| ||||||||||||||| |||||||| |||| Sbjct 21808 CGAGCCTGAATAGGGCGTTTAGTATGTGGTCGTAGACCCGAAACCAGGTGATCTAGCCAT 21749 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||| | |||||| |||||| ||||||| || |||||||| Sbjct 21748 GAGCAGGTTGAAGTTAATGTAACAGTTAATGGAGGACCGAACCAACGTTCGTTGAAAAGA 21689 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||||| ||| ||||||| | || | ||| |||| ||||||||||||| Sbjct 21688 CCGTGGATGACTTGTGGCTAGCGGTGAAATTCCAATCGAACCTGGAGATAGCTGGTTCTC 21629 Query 181 TCCGAAAACTATTTAGG--TAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||| | |||||| ||| | | || || | || || |||| ||| ||| || Sbjct 21628 CCCGATATAGTTTTAGGACTAGCGTCAGAATTAGTGCAAT-GGAGGTAAAGCTCTGA-AT 21571 Query 239 GGCT-AGGGGGTCATTGCGACTTACCAAA--CCATTGCAAACTCCGAATGCGCATCAGTT 295 | | | || || || ||| || | ||| ||||| ||||||| ||| ||| Sbjct 21570 GTATGATGGCCCCACCTCGGGGTACTGAATGCAATT--AAACTGCGAATGC-CATT-GTT 21515 Query 296 TTACCGCGGG-AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | | || ||| || ||||||| |||||||| || || |||| || | || | Sbjct 21514 ACATATCTGGCAGTCAGTCTATGGGTGATAAGGTCCATGGACGTGAGGGAAACAGCCCAG 21455 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | ||||||||||| ||| |||| | ||||||| || ||||| || |||| | || Sbjct 21454 ATCATCAGCTAAGGTCCCCAAATCAATGCTAAGTGGAA--AACGATGTGGAATTGTTCAG 21397 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| Sbjct 21396 ACAGCTAGGAGGTTGGCTTAGAAGCAGCCATCC-TTTAAAGAGTGCGTAACAGCTCACTA 21338 Query 475 GTCG-AGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 |||| | || || ||| ||| ||| | || |||| | ||||||||| |||| Sbjct 21337 GTCGAATGATTC-TGCGCGGAAAATGTACCGGGGCTAAGCATTGTACCGAAGCTATGGGT 21279 Query 534 TCATTTATATG 544 || |||||| Sbjct 21278 CTATATATATG 21268 >seq920 Length=66673 Score = 221 bits (244), Expect = 4e-55 Identities = 390/551 (71%), Gaps = 18/551 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||| | ||| |||||| ||| ||| ||||||||||||||| |||||||| |||| Sbjct 7016 CGAGCCTGAATAGGGCGTTTAGTATGTGGTCGTAGACCCGAAACCAGGTGATCTAGCCAT 7075 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||| | |||||| |||||| ||||||| || |||||||| Sbjct 7076 GAGCAGGTTGAAGTTAATGTAACAGTTAATGGAGGACCGAACCAACGTTCGTTGAAAAGA 7135 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||||| ||| ||||||| | || | ||| |||| ||||||||||||| Sbjct 7136 CCGTGGATGACTTGTGGCTAGCGGTGAAATTCCAATCGAACCTGGAGATAGCTGGTTCTC 7195 Query 181 TCCGAAAACTATTTAGG--TAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 |||| | |||||| ||| | | || || | || || |||| ||| ||| || Sbjct 7196 CCCGATATAGTTTTAGGACTAGCGTCAGAATTAGTGCAAT-GGAGGTAAAGCTCTGA-AT 7253 Query 239 GGCT-AGGGGGTCATTGCGACTTACCAAA--CCATTGCAAACTCCGAATGCGCATCAGTT 295 | | | || || || ||| || | ||| ||||| ||||||| ||| ||| Sbjct 7254 GTATGATGGCCCCACCTCGGGGTACTGAATGCAATT--AAACTGCGAATGC-CATT-GTT 7309 Query 296 TTACCGCGGG-AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | | || ||| || ||||||| |||||||| || || |||| || | || | Sbjct 7310 ACATATCTGGCAGTCAGTCTATGGGTGATAAGGTCCATGGACGTGAGGGAAACAGCCCAG 7369 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 | ||||||||||| ||| |||| | ||||||| || ||||| || |||| | || Sbjct 7370 ATCATCAGCTAAGGTCCCCAAATCAATGCTAAGTGGAA--AACGATGTGGAATTGTTCAG 7427 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| Sbjct 7428 ACAGCTAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAGTGCGTAACAGCTCACTA 7486 Query 475 GTCG-AGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 |||| | || || ||| ||| ||| | || |||| | ||||||||| |||| Sbjct 7487 GTCGAATGATTC-TGCGCGGAAAATGTACCGGGGCTAAGCATTGTACCGAAGCTATGGGT 7545 Query 534 TCATTTATATG 544 || |||||| Sbjct 7546 CTATATATATG 7556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689566613504