Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1322 197 4e-46 >seq1322 Length=110664 Score = 197 bits (218), Expect = 4e-46 Identities = 275/381 (72%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 ||| ||||| ||||| || | || ||||||||| ||| ||| || || || || | Sbjct 29792 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 29733 Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 |||| | ||| | ||| | |||||| | ||| | |||||||| || || |||| Sbjct 29732 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAAGTTGTTGGTGATGATTTATTCG 29674 Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 | ||||| || ||| || || |||| ||| || ||| |||||| ||| | | Sbjct 29673 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTATTAAAAACGTTGCTAATTCAGTATT 29616 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 || ||| | || ||||| || || || ||||||||| | || ||||| |||||| | Sbjct 29615 AATTAAACTAAATCAAATTGGAACATTAACTGAAACTATGGAGGCTATTGAAATGTGTCA 29556 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||||||| | |||||||||||||| || ||||| || |||||||||||| |||| || Sbjct 29555 AAAAGCTGGGTGAACAGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 29496 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 ||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | || Sbjct 29495 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 29436 Query 2871 TGACCGTATTGCTAAATACAA 2891 ||| ||| |||| ||||| || Sbjct 29435 TGATCGTGTTGCAAAATATAA 29415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156034738558944