Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq28646 132 3e-29 seq28635 132 3e-29 seq17000 132 3e-29 seq3424 86.0 4e-15 >seq28646 Length=1435 Score = 132 bits (146), Expect = 3e-29 Identities = 104/123 (85%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75 |||| | |||||||||| |||||| ||||||||| | || |||||||| | ||||||| | Sbjct 270 CCTAAGATTACCTTGTTACGACTTTACCCCAGTCTTAAACCACAAAGTAGAAAGCGCC-T 328 Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 |||| ||| || |||| ||||||||||||||||||| || ||| ||||||| ||||||| Sbjct 329 CCCGTAGGATACGCTATCTACTTCTTTTGCAACCCATACCTATGATGTGACGTGCGGTGT 388 Query 136 GTA 138 ||| Sbjct 389 GTA 391 >seq28635 Length=1435 Score = 132 bits (146), Expect = 3e-29 Identities = 104/123 (85%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75 |||| | |||||||||| |||||| ||||||||| | || |||||||| | ||||||| | Sbjct 270 CCTAAGATTACCTTGTTACGACTTTACCCCAGTCTTAAACCACAAAGTAGAAAGCGCC-T 328 Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 |||| ||| || |||| ||||||||||||||||||| || ||| ||||||| ||||||| Sbjct 329 CCCGTAGGATACGCTATCTACTTCTTTTGCAACCCATACCTATGATGTGACGTGCGGTGT 388 Query 136 GTA 138 ||| Sbjct 389 GTA 391 >seq17000 Length=285 Score = 132 bits (146), Expect = 3e-29 Identities = 104/123 (85%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 16 CCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCT 75 |||| | |||||||||| |||||| ||||||||| | || |||||||| | ||||||| | Sbjct 251 CCTAAGATTACCTTGTTACGACTTTACCCCAGTCTTAAACCACAAAGTAGAAAGCGCC-T 193 Query 76 CCCGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGT 135 |||| ||| || |||| ||||||||||||||||||| || ||| ||||||| ||||||| Sbjct 192 CCCGTAGGATACGCTATCTACTTCTTTTGCAACCCATACCTATGATGTGACGTGCGGTGT 133 Query 136 GTA 138 ||| Sbjct 132 GTA 130 >seq3424 Length=437 Score = 86.0 bits (94), Expect = 4e-15 Identities = 82/100 (82%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACA-AAGTGGTAAGCGCC 73 ||| | ||||||||| || |||||| |||| || ||| || || | |||||||||||||| Sbjct 402 CCCGAAGGTTACCTT-TTACGACTTTACCC-AGCCATAAACCAGATAAGTGGTAAGCGCC 345 Query 74 CTCCCGAAGGTTAAGCTACCTACTTCTTTTGCAAC-CCAC 112 ||||||||||||||||||| | ||| || |||| |||| Sbjct 344 TTCCCGAAGGTTAAGCTACCGATGTCTCTTACAACACCAC 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345436159680