Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15086 219 6e-55 seq7355 219 6e-55 seq32187 205 1e-50 seq16818 201 2e-49 seq27934 194 3e-47 seq6850 159 5e-37 seq24204 122 1e-25 seq44201 96.9 5e-18 >seq15086 Length=10902 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 2746 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2689 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 2688 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 2629 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 2628 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 2572 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 2571 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 2515 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 2514 AGCCGCCTGTCCCTCTAA 2497 >seq7355 Length=4333 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 2026 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 2083 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 2084 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 2143 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 2144 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 2200 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 2201 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 2257 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 2258 AGCCGCCTGTCCCTCTAA 2275 >seq32187 Length=4293 Score = 205 bits (226), Expect = 1e-50 Identities = 179/218 (82%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| | Sbjct 4081 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACAGGGAATT-C 4138 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 4139 CTCGTTCATGGGGAACAATTGCAAACCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 4198 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | | ||||||||||||||||| Sbjct 4199 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTTAGTGTAGCGCGCGTGCG 4255 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||||||||||||||||||||||||||||| Sbjct 4256 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 4293 >seq16818 Length=24007 Score = 201 bits (222), Expect = 2e-49 Identities = 185/227 (81%), Gaps = 8/227 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||| | |||| ||| Sbjct 22054 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTAAT-GGAAATTC 21997 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 21996 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGCGTT 21937 Query 120 ACCCGGACCTGT-CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| ||| | |||||| || | || || ||| | | |||||||||||||||||| Sbjct 21936 ACCCGGGCCTATTCGGCCAGGGAAA---ACACGCTGATTTCTTCAGTGTAGCGCGCGTGC 21880 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||||||||||||||| ||||||||||||| ||||| || Sbjct 21879 GGCCCAGAACATCTAAGGGCATCAAAGACCTGTTATTG-CTCAATCT 21834 >seq27934 Length=5409 Score = 194 bits (214), Expect = 3e-47 Identities = 182/226 (81%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| | || ||||| || |||||||||||||||| |||| ||| Sbjct 282 GTACAAAGGGCAGGGACGTAATTAATGCGAGATT-ATGACTCGCGCTTACT-GGAAATTC 225 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| ||| | ||| |||| | || Sbjct 224 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTGGCACTAAGAACGTTCAGCGGGTT 165 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 164 ACCCGGGCCTTTCGGCCAGGGACA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 108 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 107 GCCCAGAACATCCAAGGGCATCACAGACCTGTTATTG-CTCAATCT 63 >seq6850 Length=7053 Score = 159 bits (176), Expect = 5e-37 Identities = 175/224 (78%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| | ||||| |||||| | Sbjct 6745 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACATTTACTTGGAATT-C 6688 Query 61 CTCGTTGA-AGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 |||||| | ||| || ||||||||| | ||||| |||||| || |||| | || Sbjct 6687 CTCGTTCACAGAA-AATAATTGCAATTTCCGATCCCTATCACGGCAAACGTTCACCGGTT 6629 Query 120 -ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| ||| |||| | | | || ||| | | ||||||||||||||||| Sbjct 6628 TACCAATCCCTTTCGAGAAAGG--AAACGCACGCTGACTTTACCAGTGTAGCGCGCGTGC 6571 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 6570 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 6528 >seq24204 Length=251 Score = 122 bits (134), Expect = 1e-25 Identities = 122/154 (79%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGT- 131 ||||||||||| | ||||| | ||||| | | |||| | |||||||| ||| | Sbjct 239 AACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGCGTTACCCGGGCCTATT 180 Query 132 CGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATC 191 |||||| || | || || ||| | | ||||||||||||||||||||||||||||||| Sbjct 179 CGGCCAGGGAAA---ACACGCTGATTTCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATC 123 Query 192 TAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||| ||||||||||||| ||||| || Sbjct 122 TAAGGGCATCAAAGACCTGTTATTG-CTCAATCT 90 >seq44201 Length=202 Score = 96.9 bits (106), Expect = 5e-18 Identities = 61/65 (94%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| Sbjct 195 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGTCATCACAGACCTATTATTG-CTC 137 Query 221 AAACT 225 || || Sbjct 136 AATCT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751631612120