Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq15086 205 2e-50 seq16818 170 4e-40 seq7355 156 8e-36 seq32511 80.6 5e-13 >seq15086 Length=10902 Score = 205 bits (226), Expect = 2e-50 Identities = 222/286 (78%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | || ||||||||||| ||||||||||| || Sbjct 1777 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTC 1836 Query 100 AAAGCAGGC--CTTT-GCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || | || |||||| | |||||||||||| ||||||||| | |||| Sbjct 1837 AAAGCAGGCTACTCTCGCCTGAATACTCTGTGCATGGAATAATGGAATAGGACCT-CGGT 1895 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 1896 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 1954 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| |||| ||||||| Sbjct 1955 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACTAAAGCGAAAG 2014 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 2015 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 2059 >seq16818 Length=24007 Score = 170 bits (188), Expect = 4e-40 Identities = 212/282 (75%), Gaps = 15/282 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || ||||| | || ||||||||||| ||||||||||| || Sbjct 21089 TGCTCTTCATTGAGTGTCGAGGTGAGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTC 21148 Query 100 AAAGCAGGC--CT-TTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || | || |||||| | |||||||||||| ||||||||| | |||| Sbjct 21149 AAAGCAGGCTACTCTCGCCTGAATACTCTGTGCATGGAATAATGGAATAGGACCT-CGGT 21207 Query 156 TCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||| | |||||| | ||| ||| ||||||||||||||||| || ||||| | Sbjct 21208 TCTATTTCGCTGGTTT-TCGGAAACCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 21266 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| | || | ||||||||||||| |||| ||| ||||||| Sbjct 21267 TCGTATTGCAACGTTA-----GAAATTCTTGGATCGTCGCAAGATGGACTGAAGCGAAAG 21321 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 | || |||| |||||||||||||||| |||||||||||| Sbjct 21322 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTA 21362 >seq7355 Length=4333 Score = 156 bits (172), Expect = 8e-36 Identities = 185/247 (75%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATG 131 |||||||||||| |||| |||||| | ||| ||||| ||| ||| | || | || ||||| Sbjct 2955 TTTTACTTTGAACAAATCAGAGTGCTTAAAACAGGCGTTTCGCTTGTATGCTTTTGCATG 2896 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||||||||| ||| | ||||| |||| ||||||| || || ||||||||| Sbjct 2895 GAATAATAGAATATGACTT-CGGTTTAGTTTTATTGGTTTTATAGATCGTTGTAATGATT 2837 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || || || | |||||| | ||||| || |||||||||||||||||| Sbjct 2836 AAAAGAGACAAACGGGGGCATTCGTATTGTTGCGTGAGAGGTGAAATTCTTGGACCGCAG 2777 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| | | || |||||||| || ||||| ||| ||||||||||| ||||||||| Sbjct 2776 CAAGACGACCAACAGCGAAAGCATTTGCCAAGCTTGTCTTCATTAATCA-AGAACGAAAG 2718 Query 312 TTAGGGG 318 | || || Sbjct 2717 TCAGAGG 2711 >seq32511 Length=225 Score = 80.6 bits (88), Expect = 5e-13 Identities = 88/116 (76%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 |||||||||| |||||| |||| ||| | | | ||||||||||| ||||||||||| | Sbjct 103 TGCCCTTCACCGGGTGTCTCGGGCGGCCGGCAACGTTTACTTTGAACAAATTAGAGTGCT 162 Query 99 CAAAGCAGG------CCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||||||| || || ||||| |||||||||| || ||||||||| Sbjct 163 CAAAGCAGGTGTATCCCAACGCCTGAATATCGCAGCATGGAATGATGGAATAGGAC 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914737201664