Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq16818 183 8e-44 seq20524 113 1e-22 seq40152 91.5 4e-16 >seq16818 Length=24007 Score = 183 bits (202), Expect = 8e-44 Identities = 177/221 (80%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAG-CAGCCGCGGTAATACGTAGGGTG 61 |||||| |||| |||||||||||||| |||| | | ||||| ||||||||| |||| | Sbjct 23747 TACCTGCAGAAGAAGCACCGGCTAACGCCGTGGCTGACAGCCAGGGTAATACGGAGGGCG 23806 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTG 121 |||||||||||||||||||||||||||||||||| |||| |||||| |||| ||| || Sbjct 23807 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTACGCAAGCGGTTTGTTAAGTCAGATG 23866 Query 122 TGAAATCCCCGGGCTTAACCT-GGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTC 179 | ||||||| ||||||| | ||||| |||||||| ||| ||| | ||||||| | | Sbjct 23867 TAAAATCCCTAAGCTTAACTTAGGGAACTGCATTTGAAACTAGCA-GGCTAGAGTCT-CC 23924 Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAG 220 | |||| | |||||||| ||||||| | || | | |||| Sbjct 23925 TGGAGGGGATAGAATTCCAAGTGTAGCGGCGACAAGTGTAG 23965 >seq20524 Length=267 Score = 113 bits (124), Expect = 1e-22 Identities = 151/202 (75%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 141 CTGGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCAC 199 || |||| |||||||| ||| ||| | ||||| | | |||| ||| | |||| ||| Sbjct 1 CTAGGAACTGCATTTGAAACTAGCAGG-CTAGAATTTTGTAGAGCGGG-TAGAATGCCAA 58 Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 || || | || || |||||||| || |||||||| | | |||||||||||| ||||| | Sbjct 59 GTCTAACGGTAAAGTGCGTAGAGATCTGGAGGAATATCCCTGGCGAAGGCAG-CCCCTAG 117 Query 260 GATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGA-TTAGATACCCTGGT 318 || | ||||| ||| | |||||||||| |||| |||||||| ||||||| || | Sbjct 118 ACGAAGATTGACGTTCAGGTGCGAAAGCGTGTGGAGAAAACAGGATTTAGATAGCCGAAT 177 Query 319 AGTCCACGCCCTAAACGATATC 340 || ||||| |||||||| || Sbjct 178 AG-CCACGTTGTAAACGATGTC 198 >seq40152 Length=209 Score = 91.5 bits (100), Expect = 4e-16 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 193 ATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGC 252 |||||| ||| | ||| ||| || || | || ||||| || ||| ||||||| ||||| Sbjct 1 ATTCCAGGTGCGGTAGTAAAA-GCTTATAGATCTGGAGAAATACCCGTGGCGAAAGCAGC 59 Query 253 CCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATAC 312 | ||| | ||| || |||| | ||||||| || ||| || |||||||||||||| Sbjct 60 CTCCTCAAGGAGGACTAACTCTCAAGTACGAAAGTCTGTGGAACATACAGGATTAGATAC 119 Query 313 CCTGGTAGTCCA-CGCCCTAAACGATATC 340 |||| ||||||| | | |||||||| || Sbjct 120 CCTGATAGTCCATCACTATAAACGATTTC 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288947875072