Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6850 78.8 2e-12 seq12430 77.0 8e-12 seq48442 75.2 3e-11 >seq6850 Length=7053 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| |||||| ||| ||||| ||| | ||||| ||| |||| ||||||||| || Sbjct 3015 TCGTTAATCCATTCATGCGCGTCGGGACTCATCCGACGAGGCATTTGGCTACCTTAAGAG 2956 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 || || ||||| |||||||||||| | |||| Sbjct 2955 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 2923 >seq12430 Length=319 Score = 77.0 bits (84), Expect = 8e-12 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATT-TCAATTTCACTGAGTCTCGGGTGGAGACAG 59 ||||| ||| | | |||| || | || ||||||| ||||||||| ||||||||||| Sbjct 207 CGCGGGTACTCGCCGTCTTAACGGTGAGACTCAATTTTGCTGAGTCTCAGGTGGAGACAG 148 Query 60 CGCCGCCATCGTTACGCCA-TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 | |||| |||| | | || |||| ||| | ||||||||||||||| ||||| ||| Sbjct 147 CCTGATCATCATTACCCTAATTAGTGCGGGTTGCAACTTACCCGACAAGAAATTTTGCT 89 >seq48442 Length=621 Score = 75.2 bits (82), Expect = 3e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| |||||| ||| ||||| ||| | ||||| ||| |||| ||||||||| || Sbjct 533 TCGTTAATCCATTCATGCGCGTCGGGACTCATCCGACGAGGCATTTGGCTACCTTAAGAG 592 Query 128 CGTTATTGTTACGGCCGCCGTTTACC 153 || || ||||| |||||||||||| Sbjct 593 AGTCATAGTTACTCCCGCCGTTTACC 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260162438656