Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq35787 134 4e-29 seq3424 107 6e-21 seq28646 105 2e-20 seq28635 105 2e-20 seq17833 87.8 5e-15 >seq35787 Length=218 Score = 134 bits (148), Expect = 4e-29 Identities = 140/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 167 ATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCC 226 || ||| ||||| ||| ||| || || ||||||||| ||||||||||||||||||||| Sbjct 37 ATAGTTATCGTCTGCTTCTGTTGTAAGCGGTTGGGTTACGTCCCGCAACGAGCGCAACCC 96 Query 227 TTAAGCTTAGTTGCCATC-ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG 285 ||| | | ||| || | |||| || || |||| ||| ||||||| | | |||||| Sbjct 97 TTATCCCTTGTTTTCAGCGATTAGGTAGGAAACTCAAAGAAAACTGCCGATCATAAACCG 156 Query 286 GAGGAAGGTGGGGACGACGTCAAATCATC-ATGCCCCTTATGATTTGGGCTACACACGTG 344 ||||||||| |||| ||| |||| ||||| ||| ||| || || | ||||| |||| ||| Sbjct 157 GAGGAAGGTTGGGATGACCTCAACTCATCAATGGCCCGTACGAGTAGGGCTGCACATGTG 216 Query 345 C 345 | Sbjct 217 C 217 >seq3424 Length=437 Score = 107 bits (118), Expect = 6e-21 Identities = 191/267 (72%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 233 TTAGTTGCCATC-ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAA 291 || ||||||| | ||| ||||| |||| |||| ||||||| | | ||| | | | Sbjct 7 TTTGTTGCCAGCGATTCGGTTGGCAACTCAAAGTGGACTGCCTTTAATAAAG-GCAATTA 65 Query 292 GGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAAT 351 | |||| | || |||| | ||||| | |||| || | ||||||||||||||||| ||| Sbjct 66 GATGGGAA-GATGTCAGGTTATCATAGCTCTTACGAGTGGGGCTACACACGTGCTAAAAT 124 Query 352 GG-ACA-ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGT-TGTTCT 408 || ||| | | |||| | || | |||||| | || | | |||| || ||| || Sbjct 125 GGCACATACAAAAAGAGAAGTAATCTCGCGAGAT-TAGTGGACCTCATACGGTGTGTCCT 183 Query 409 CAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCG-CTAGTAATCGTAG 467 | | ||||||| ||| ||||| || ||| ||| | | ||||| |||||||||| | Sbjct 184 -ACTCCGGATTGGAGTTTGCAATTCAACTCCCTGAGGTTTAAATCGATTAGTAATCGTTG 242 Query 468 ATCAGCATGCTACGGTGAATACGTTCC 494 ||||| |||||||||| ||||||| || Sbjct 243 ATCAGAATGCTACGGTAAATACGTGCC 269 >seq28646 Length=1435 Score = 105 bits (116), Expect = 2e-20 Identities = 182/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 |||| || || |||| ||| ||||||| | | ||||||||||||||| |||| ||| Sbjct 652 ATTAGGTAGGAAACTCAAAGAAAACTGCCGATCATAAACCGGAGGAAGGTTGGGATGACC 593 Query 305 TCAAATCATC-ATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 |||| ||||| ||| ||| || || | ||||| |||| |||| |||| | || |||| Sbjct 592 TCAACTCATCAATGGCCCGTACGAGTAGGGCTGCACATGTGCAGCAATAGCGTATGCAAA 533 Query 364 GGGCAGCGA--AACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 | | ||| | || ||| || || | | |||||||| || ||| |||| Sbjct 532 GAGAAGCAATTTTTCGAGAGTTC--GCCGACCTCATAAAGTCAGTCGTAGTCTAAATTGG 475 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481 || || ||| |||| || | ||||||||||||| || ||| || |||| ||| Sbjct 474 AGACTATGACTTGACTGCATTTACGCAAAATCGCTAGTAATAGTGGATAAGGATGCCACG 415 Query 482 GTGAATACGTTCCCGCTCCCT 502 |||||||||| ||| | ||| Sbjct 414 ATGAATACGTTTCCGGTGCCT 394 >seq28635 Length=1435 Score = 105 bits (116), Expect = 2e-20 Identities = 182/261 (70%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 |||| || || |||| ||| ||||||| | | ||||||||||||||| |||| ||| Sbjct 652 ATTAGGTAGGAAACTCAAAGAAAACTGCCGATCATAAACCGGAGGAAGGTTGGGATGACC 593 Query 305 TCAAATCATC-ATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 |||| ||||| ||| ||| || || | ||||| |||| |||| |||| | || |||| Sbjct 592 TCAACTCATCAATGGCCCGTACGAGTAGGGCTGCACATGTGCAGCAATAGCGTATGCAAA 533 Query 364 GGGCAGCGA--AACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 | | ||| | || ||| || || | | |||||||| || ||| |||| Sbjct 532 GAGAAGCAATTTTTCGAGAGTTC--GCCGACCTCATAAAGTCAGTCGTAGTCTAAATTGG 475 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481 || || ||| |||| || | ||||||||||||| || ||| || |||| ||| Sbjct 474 AGACTATGACTTGACTGCATTTACGCAAAATCGCTAGTAATAGTGGATAAGGATGCCACG 415 Query 482 GTGAATACGTTCCCGCTCCCT 502 |||||||||| ||| | ||| Sbjct 414 ATGAATACGTTTCCGGTGCCT 394 >seq17833 Length=280 Score = 87.8 bits (96), Expect = 5e-15 Identities = 160/228 (70%), Gaps = 10/228 (4%) Strand=Plus/Minus Query 275 GTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGC 334 |||| || | |||||| || ||| ||||||| ||||||| |||||| || | |||| Sbjct 264 GTGATAAGCTAGAGGAAAGTATGGATAACGTCAAGCCATCATGGCCCTTAGGAGTGGGGC 205 Query 335 TACACACGT-GCTACAATGGACA---ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA- 389 ||||| | |||| || | | |||||||| | ||| || | || | || Sbjct 204 G-CACACATTGCTATTATAGTAATGCATACAAAGAGAAGC--AATCTTGACAAAAGTCAT 148 Query 390 AATCCC--ATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 || || ||||| | | ||||||| ||| || |||||||||| | | ||| Sbjct 147 AAGACCTGATAAACTACGGCGTAGTTCGGGTTGAGGTTTGCAACTCGATTCCGTCAAGTC 88 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 |||||||||||||||||| ||||| |||| |||| |||||||||||| Sbjct 87 GGAATCGCTAGTAATCGTGAATCAGAATGCCACGGCGAATACGTTCCC 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503239457280