Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6850 217 2e-54 seq15086 214 3e-53 seq7355 214 3e-53 seq16818 174 3e-41 seq27934 113 7e-23 seq24204 109 9e-22 seq32187 102 1e-19 seq44201 100 5e-19 >seq6850 Length=7053 Score = 217 bits (240), Expect = 2e-54 Identities = 201/248 (81%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 6587 CAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 6529 Query 77 AACTTCCATTGGCTGGAAG-CCAATAGTCCCTCTAAGAAGC----CAGC-CACCAACCAT 130 | || ||| | | || || | | | |||||| |||| |||| || | | Sbjct 6528 A--TTTCATGCGGTTAAACACCGAAAATTCCTCTAGGAAGTACCGCAGCACAGTGAAAAC 6471 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | |||| |||||||| ||| || |||||| ||||||||||||| ||||||||||| Sbjct 6470 AAT-GCTGGGACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAA 6412 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 6411 TCACTCCACGAACTAAGAACGGCCATGCACCACCATCCACCAAATCATGAAAGAGCTATC 6352 Query 251 AATCTGTC 258 |||||||| Sbjct 6351 AATCTGTC 6344 >seq15086 Length=10902 Score = 214 bits (236), Expect = 3e-53 Identities = 219/292 (75%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2594 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 2535 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 2534 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 2477 Query 116 -----------CCAGCCACCAA--CCATAG----TCGA------------TGGGGCTATT 146 || || ||| | || | |||| | | ||||| Sbjct 2476 GTAGTAAAAACCCCGCGACCGAAGCCGGGGGCCTTCGAGATACCATAAGTTACGTCTATT 2417 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2416 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 2357 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2356 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 2305 >seq7355 Length=4333 Score = 214 bits (236), Expect = 3e-53 Identities = 219/292 (75%), Gaps = 47/292 (16%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2178 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 2237 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG---------------- 115 | |||| || | |||| |||||| |||||||||||||| Sbjct 2238 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 2295 Query 116 -----------CCAGCCACCAA--CCATAG----TCGA------------TGGGGCTATT 146 || || ||| | || | |||| | | ||||| Sbjct 2296 GTAGTAAAAACCCCGCGACCGAAGCCGGGGGCCTTCGAGATACCATAAGTTACGTCTATT 2355 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2356 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 2415 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2416 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 2467 >seq16818 Length=24007 Score = 174 bits (192), Expect = 3e-41 Identities = 208/288 (72%), Gaps = 47/288 (16%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 21897 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCAAAGACCTGTTATTGC-TC 21839 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG-------------------- 115 || || | |||| |||||| |||| |||||||| Sbjct 21838 AATCT-CGTGCGGCTAGAAGCCGCCTGTCCTTCTAAGAAAATTTGTTTGTACGTTGGTAG 21780 Query 116 -------CCAGCCACCAA--CCATAG----TCGA------------TGGGGCTATTTAGC 150 || || ||| | || || |||| | | |||||||| Sbjct 21779 TAAAAACCCCGCGACCGAAGCCGGAGGCCTTCGAGATACCATAAGTTACGTCTATTTAGG 21720 Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 || || |||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 21719 AGACTAGAATCTCGTTCGTTATCGGAATTTACCAGACAAATCGCTCCACCAACTAAGAAC 21660 Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 21659 GGCCATGCACCACCACCCGCCGAATCAAGAAAGACCTATCAATCTGTC 21612 >seq27934 Length=5409 Score = 113 bits (124), Expect = 7e-23 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 130 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCCAAGGGCATCACAGACCTGTTATTG 71 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| |||||||||| ||| Sbjct 70 -CTCAATC-TCTTGCGGCTAGAAGCCGCCTGTCCCTCTAACAAG 29 >seq24204 Length=251 Score = 109 bits (120), Expect = 9e-22 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 153 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCAAAGACCTGTTATTG-CTC 95 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA 114 || | || |||| |||||| |||| |||||||| Sbjct 94 AATC-TCGTGCGGCTAGAAGCCGCCTGTCCTTCTAAGAA 57 >seq32187 Length=4293 Score = 102 bits (112), Expect = 1e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4233 TCCTTTAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 4292 Query 72 C 72 | Sbjct 4293 C 4293 >seq44201 Length=202 Score = 100 bits (110), Expect = 5e-19 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 199 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGTCATCACAGACCTATTATTG 140 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||| | || |||| |||||| ||| | || ||||| Sbjct 139 -CTCAATC-TCGTGCGGCTAGAAGCCGTCTGTCTCCCTGAGAAG 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796409665608