Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq50065 104 5e-20 >seq50065 Length=546 Score = 104 bits (114), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| ||||||||| || ||||| |||| ||||||||||||||| | Sbjct 447 GGACAGTGTTTGGTGGGTAGTTTGACTTGG-CGGTCTTCTCCAAAAGAGTAACGGAGGAG 389 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | | ||| | | | | || ||| | | || | |||| ||||||| ||| | Sbjct 388 CACGAAGGTTAGATAATCACGGTCGGACATCGTGAGGTTAGTGTAAAGGCATAAGCTAGC 329 Query 232 TTGACTGCGACACCCTCAAGTCT--AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 |||||||||| | | | |||| |||||| |||| || ||| |||||||| || Sbjct 328 TTGACTGCGAGAG--TGACGTCTCGAGCAGGTTTAAAAGCAGGTCTTGGTGATCCGGTGG 271 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGG 336 | || | |||| ||| ||||| ||||||||||| ||| |||||| Sbjct 270 TTATGCAAGGAAGTGCCATCGCTTAACGGATAAAAGGTACTCTGGGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981903219968