Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq12211 95.1 3e-17 seq8795 87.8 4e-15 >seq12211 Length=321 Score = 95.1 bits (104), Expect = 3e-17 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 88 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG- 146 ||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||| Sbjct 10 CCCGTAGGAGTCTAAACCGTGTCTAAGTTCCAGTGCAGTTAGTCATCCTCTTAAACCAGC 69 Query 147 TTACGGATCGTCGCCTTGGTGAGCCAT-TACCTCACCAACTAGCTAATCCGACCTAGGCT 205 | | |||| ||||| |||||||||| |||| || ||| |||||| | || | Sbjct 70 TCAAGGATTGTCGCTAAGGTGAGCCATGTACCCTACTTACTCGCTAATTGCATTGGGGTT 129 Query 206 CATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||||||| | |||| |||||| ||| |||| Sbjct 130 CATCTGATAGTGTGAGGCGGGAAGGTTCCCGACTTT 165 >seq8795 Length=355 Score = 87.8 bits (96), Expect = 4e-15 Identities = 122/163 (75%), Gaps = 10/163 (6%) Strand=Plus/Plus Query 3 TTACAATCCGAAGACCTTCTTTCA-CACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||| ||| ||||| |||||||| | ||||| || || ||||| |||| | |||| | | Sbjct 113 TTAGAATGCGAAGGCCTTCTTTTAACACACACGAGAT-GGCTGCATCAAGGTTTC--CTA 169 Query 62 TT---GTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT-TC 117 || || || ||||||| ||||| | || | || ||||||||||||||||||||| | Sbjct 170 TTTTTGTACA-TATTCCCGACTGCAGACTTCAATAAGAGTCTGGACCGTGTCTCAGTATT 228 Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 |||||| ||||| | || | | |||| || |||||| ||| Sbjct 229 AAGTGTGCCTGATTACCCAC-CGATCCAGCTAAGGATCGACGC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071457911040