Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq9940 100 7e-19 seq11376 87.8 4e-15 seq47086 75.2 3e-11 seq43461 75.2 3e-11 seq16818 75.2 3e-11 seq15086 75.2 3e-11 >seq9940 Length=343 Score = 100 bits (110), Expect = 7e-19 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| |||| ||||||||||||| |||||||||| ||||||| ||||| |||| Sbjct 250 GTTCTTTTCACCTTGCCCTCACGGTACTGGTTCACTATCCAACAGTCAGCAGTATCTAGC 191 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACA 394 ||||||| || |||| || || || ||||| Sbjct 190 CTTGGAGCATAGTCCACCAATCTTTAGACA 161 >seq11376 Length=328 Score = 87.8 bits (96), Expect = 4e-15 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 222 AAGGTACGCAGTCACCCAACAAAGTGG--GCTCCCACTGCTTGTACGCATACGGTTTCAG 279 ||| ||||||||||| || | | || || ||| || ||| | | |||||| || Sbjct 1 AAGATACGCAGTCAC---ACCAGGAGGATGC-CCCGTTGTTTGGATTTACACGGTTCTAG 56 Query 280 GATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCAC 339 |||| || | ||||||| ||||| ||||||| |||||||||| ||| ||| |||||| Sbjct 57 ATTCTACTTTAGTCCCCTCGCCGGGCTTCTTTT-GCCTTTCCCTTACGCCACTGGTTCAC 115 Query 340 TATCGGTCAGTCAGT-AGTATTTAGCCTTGGAGG 372 ||||| |||| ||| | ||||| ||| |||||| Sbjct 116 TATCGCTCAGGTAGTGAATATTTGGCCCTGGAGG 149 >seq47086 Length=34395 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 16805 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 16863 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| || |||||||||||| || Sbjct 16864 ACTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 16904 >seq43461 Length=16652 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 10498 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 10556 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| || |||||||||||| || Sbjct 10557 ACTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 10597 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 15950 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 15892 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| || |||||||||||| || Sbjct 15891 ACTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 15851 >seq16818 Length=24007 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 23518 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCTACTTTCCCTCACGGT 23460 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| || |||||||||||| || Sbjct 23459 ACTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 23419 >seq15086 Length=10902 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | || || |||| | ||| | ||||||||| |||||||||||||| Sbjct 8026 ACGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGT 7968 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 ||| |||| ||||||||| || |||||||||||| || Sbjct 7967 ACTTGTTCGCTATCGGTCTCGTGGTTGTATTTAGCCTTAGA 7927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240972147712