Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq50065 125 5e-27 seq4654 71.6 1e-10 >seq50065 Length=546 Score = 125 bits (138), Expect = 5e-27 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||| ||||||||| ||||| | |||| |||||||||||| | |||||| Sbjct 232 TACCTTTTATCCGTTAAGCGATGGCACTTCCTTGCATAACCACCGGATCACCAAGACCTG 291 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||| | |||||| || || |||||||| |||||| ||| |||| || ||||| Sbjct 292 CTTTTAAACCTGCTCGAGACGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTACACTAA 351 Query 121 CACTACGATTTCCGACCGT 139 | ||||| ||||||||| Sbjct 352 CCTCACGATGTCCGACCGT 370 >seq4654 Length=414 Score = 71.6 bits (78), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGA-CCT 59 ||||||| ||| ||| ||||||||||||||||| || | | ||| | |||||| || | | Sbjct 103 TACCTTT-ATCTGTTTAGCGATGGCCCTTCCATGCAGAACGACCCGGTCACTAAGAGCAT 45 Query 60 GCTTTCGCAT--CTGCTCTAGTTGTTGCTCTCGCAATCAAGC 99 ||||| |||| ||| | || |||| |||| | |||||||| Sbjct 44 GCTTTTGCATGCATGC-CGAGGTGTTACTCTTGAAATCAAGC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351833125600