Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq15086 122 9e-26 seq16818 95.1 1e-17 seq7355 89.7 5e-16 >seq15086 Length=10902 Score = 122 bits (134), Expect = 9e-26 Identities = 141/183 (77%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CT-TTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | ||||||||||| || | || |||||| | Sbjct 1808 ACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGCTACTCTCGCCTGAATACTCTGT 1867 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 1868 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 1925 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 1926 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 1985 Query 184 GAT 186 ||| Sbjct 1986 GAT 1988 >seq16818 Length=24007 Score = 95.1 bits (104), Expect = 1e-17 Identities = 140/191 (73%), Gaps = 13/191 (7%) Strand=Plus/Plus Query 2 GAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CT-TTGCTCGAA 58 || || | || ||||||||||| ||||||||| | ||||||||||| || | || ||| Sbjct 21112 GAGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTCAAAGCAGGCTACTCTCGCCTGAA 21171 Query 59 TAC-ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGG-- 115 ||| | ||||||||||| ||||||||| | ||||||||||| | ||||| | || Sbjct 21172 TACTCTGTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTCGCTGGTTT-TCGGAA 21229 Query 116 ACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGA 175 ||| |||||||| |||| ||| || ||||| | ||||| | || | || Sbjct 21230 ACCCGAGGTAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCAACGTTA-----GA 21284 Query 176 AATTCTTGGAT 186 ||||||||||| Sbjct 21285 AATTCTTGGAT 21295 >seq7355 Length=4333 Score = 89.7 bits (98), Expect = 5e-16 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCATG 70 |||||||||||| |||| |||| | | ||| ||||| ||| ||| | || | || |||| Sbjct 2955 TTTTACTTTGAACAAATCAGAGTGCTTAAAACAGGCGTTTCGCTTGTATGCTTTTGCATG 2896 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||||||||| ||| | ||||| |||| | ||||| || || |||||||| Sbjct 2895 GAATAATAGAATATGAC-TTCGGTTTAGTTTTATTGGTTTTATAGATCG-TTGTAATGAT 2838 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | || | |||||| | ||||| || | |||||||||||||||| Sbjct 2837 TAAAAGAGACAAACGGGGGCATTCGTATTGTTGCGTGAGAGGTGAAATTCTTGGA 2783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511749182720