Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq50065 210 2e-52 seq9250 107 2e-21 seq8373 89.7 5e-16 >seq50065 Length=546 Score = 210 bits (232), Expect = 2e-52 Identities = 140/156 (90%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||| ||||||||| ||||| | || |||||||||||||| | |||||||||| ||||| Sbjct 244 GTTAAGCGATGGCACTTCCTTGCATAACCACCGGATCACCAAGACCTGCTTTTAAACCTG 303 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| |||||||||||||||||||| |||||||||| || |||||||||||||||||| Sbjct 304 CTCGAGACGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTACACTAACCTCACGATGTC 363 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||||||||| || |||||||||||||||||||| Sbjct 364 CGACCGTGATTATCTAACCTTCGTGCTCCTCCGTTA 399 >seq9250 Length=350 Score = 107 bits (118), Expect = 2e-21 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 59 TCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTAT 118 |||||| |||||||||| |||| |||||||| ||||||||||| ||| |||| || |||| Sbjct 295 TCACTAAGACCTGCTTTTGCACATGCTCGAGGCGTCACTCTCGTAGTAAAGCTAGGTTAT 236 Query 119 GCC--ATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGC 169 ||| || || || ||| |||||| ||||||||| |||| ||||| |||| Sbjct 235 GCCCTTTTAGACCAAACTCGCGATGTTAGACCGTGATGAGCTAACCTTGGTGC 183 >seq8373 Length=360 Score = 89.7 bits (98), Expect = 5e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 112 AGCTTATGCCATT-GCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCT 170 |||||||||| || |||||||||| ||||| || ||||||| |||||| ||||||||||| Sbjct 1 AGCTTATGCCTTTTGCACTAACCTGACGATATCAGACCGTGGTTAGCTCACCTTCGTGCT 60 Query 171 CCTCCGTTA 179 ||||||||| Sbjct 61 CCTCCGTTA 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473367994016