Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq12211 215 1e-53 seq27882 156 1e-35 seq8795 87.8 4e-15 >seq12211 Length=321 Score = 215 bits (238), Expect = 1e-53 Identities = 239/317 (75%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 89 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGC 148 ||||||||||||| ||||||||| |||||||||| | | |||||||||| | |||||| Sbjct 10 CCCGTAGGAGTCTAAACCGTGTCTAAGTTCCAGTGCAGTTAGTCATCCTCTTAAACCAGC 69 Query 149 T-AGGGATCGTCGCCTAGGTGGGCCAT-TACCCCGCCAACTAGCTAATCCCATCTGGGTT 206 | | |||| ||||| ||||| ||||| ||||| | ||| |||||| ||| ||||| Sbjct 70 TCAAGGATTGTCGCTAAGGTGAGCCATGTACCCTACTTACTCGCTAATTGCATTGGGGTT 129 Query 207 CATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATT 266 |||| ||||||| ||||| |||||| ||| ||||||||||| ||| | Sbjct 130 CATCTGATAGTGTGAGGCGGGAAGGTTCCCGACTTTGGTCTTGAGACCT----------- 178 Query 267 AGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCC 326 ||| |||| | ||||| ||| ||| ||| | || || | |||||| |||||| |||| Sbjct 179 AGCTACCGCTGCCAGTAATTACCCCTCTC--TGGGGTAGATCCCCAGATATTACTTACCC 236 Query 327 GTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGT 386 | |||| | || | || ||| | |||||| ||| | | | ||| ||||||||||||||| Sbjct 237 TTACGCCGCGCGCCGGCAAAGAAACAAGCTTCTTTCCGCTTCCGCTCGACTTGCATGTGT 296 Query 387 TAGGCCTGCCGCCAGCG 403 ||| |||||| |||||| Sbjct 297 TAGACCTGCCACCAGCG 313 >seq27882 Length=238 Score = 156 bits (172), Expect = 1e-35 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 113 CAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC 172 |||||| |||| ||||| ||| | |||| || ||||| | || || || || ||| || Sbjct 2 CAGTTCTAGTGCGGCTGATCACTCGCTCAAACGAGCTAAGAATTGTTGCATAAGTGAGCT 61 Query 173 ATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAG-TGAGAGGCCCGAAGG 231 |||| |||||| | ||||||||||||||| | ||||| |||| | | ||||| | || Sbjct 62 ATTATCCCGCCTATTAGCTAATCCCATCTAGTTTCATTCGATTGCTATGAGGCTTCACGG 121 Query 232 TCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCC 291 ||| || |||| ||| | || ||||||| |||||||| || ||||||||| ||| ||| Sbjct 122 TCCACCACTTTTGTCCTAAGATGTTATGCAGTATTAGCTACTGTTTCCAGTAGTTTTCCG 181 Query 292 CCTCCATCAGGCAGTTTCCCAGACATTACTCAC 324 |||| || ||||| | |||||| |||||| || Sbjct 182 CCTCGATAGGGCAGATCCCCAGAGATTACTTAC 214 >seq8795 Length=355 Score = 87.8 bits (96), Expect = 4e-15 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 6 TTACAACCCGAAGGCCTTCTTC--ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||| || ||||||||||||| | |||| || |||||||||||| | || | | | Sbjct 113 TTAGAATGCGAAGGCCTTCTTTTAACACACACGAGATGGCTGCATCAAGGTTTC-CTATT 171 Query 64 TGTGCA-ATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT-TCCAG 121 | || | |||||||| ||||| | || | || ||||||||||||||||||||| | || Sbjct 172 TTTGTACATATTCCCGACTGCAGACTTCAATAAGAGTCTGGACCGTGTCTCAGTATTAAG 231 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTA 164 |||| ||| | | || | | ||||||| |||||| ||| || Sbjct 232 TGTGCCTGATTACCCAC-CGATCCAGCTAAGGATCGACGCTTA 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221781856768