Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq16818 145 2e-32 >seq16818 Length=24007 Score = 145 bits (160), Expect = 2e-32 Identities = 170/223 (76%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAG-CAGCCGCGGTAATACGTAGGGGG 59 ||| || || ||||| ||||||||| |||| | | ||||| ||||||||| |||| | Sbjct 23747 TACCTGCAGAAGAAGCACCGGCTAACGCCGTGGCTGACAGCCAGGGTAATACGGAGGGCG 23806 Query 60 CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGG 119 | ||||||| |||||||||||||||||||| || || | | ||||| |||||||||| | Sbjct 23807 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTACGCAAGCGGTTTGTTAAGTCAGATG 23866 Query 120 TGAAAGGCTATGGCTCAACCCCGGG-ACTGCTTTTGAAACT-GCAGGGCTAGAG--TGCA 175 | ||| | ||| ||| ||| ||||| ||||||||| ||| |||||||| | | Sbjct 23867 TAAAATCCCTAAGCTTAACTTAGGGAACTGCATTTGAAACTAGCA-GGCTAGAGTCTCCT 23925 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAG 218 ||||||| | ||||||| |||||||||| || | | |||| Sbjct 23926 GGAGGGG---ATAGAATTCCAAGTGTAGCGGCGACAAGTGTAG 23965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202591565824