Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq15086 232 1e-58 seq7355 232 1e-58 seq32187 206 5e-51 seq16818 197 3e-48 seq27934 190 4e-46 seq6850 176 9e-42 seq24204 123 5e-26 seq44201 98.7 2e-18 >seq15086 Length=10902 Score = 232 bits (256), Expect = 1e-58 Identities = 209/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 2493 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 2550 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 2551 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTTTT--- 2607 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 2608 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 2667 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2668 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 2727 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2728 ACGTCCCTGCCCTTTGTA 2745 >seq7355 Length=4333 Score = 232 bits (256), Expect = 1e-58 Identities = 209/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 2279 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 2222 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 2221 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTTTT--- 2165 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 2164 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 2105 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 2104 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 2045 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2044 ACGTCCCTGCCCTTTGTA 2027 >seq32187 Length=4293 Score = 206 bits (228), Expect = 5e-51 Identities = 175/215 (81%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 4293 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTAAAGG 4234 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || || ||| || |||||| |||| | |||||| | | || ||| ||||| Sbjct 4233 AATCAGCGTGTTTT---CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTG 4177 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | | |||||||| || | | | |||||||||| || ||||||||| ||| Sbjct 4176 CTAGGGATTGGGGTTTGCAATTGTTCCCCATGAACGAGGAATTCCCTGTAAGCGCGAGTC 4117 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| |||||||||||||||||||||||||||| Sbjct 4116 ATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 4082 >seq16818 Length=24007 Score = 197 bits (218), Expect = 3e-48 Identities = 202/258 (78%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||| |||| ||||| | ||||| || | ||||| ||||||||||||| ||| Sbjct 21801 TTCTTAGAAGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTTTGA 21858 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | || || ||| | Sbjct 21859 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGAAATCAGCGTGTTTT---C 21915 Query 192 CTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| | ||| | |||||| | || ||| ||||||| ||||| | | ||| Sbjct 21916 CCTGGCCGAATAGGCCCGGGTAACGCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 21975 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| | | |||||||| ||||| ||| |||||||||| Sbjct 21976 CAATTGTTCCCCATGAACGAGGAATTTCCATTAAGCGCGAGTCATAAGCTCGCGTTGATT 22035 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 22036 ACGTCCCTGCCCTTTGTA 22053 >seq27934 Length=5409 Score = 190 bits (210), Expect = 4e-46 Identities = 203/260 (78%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 29 CTTGTTAGAGGGACAGGCGGCTTCTAGCCGCAAGA-GATTGAG-CAATAACAGGTCTGTG 86 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||| ||||||||||||||||||||||||||||||| || || || || | Sbjct 87 ATGCCCTTGGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT---TGT 143 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC--TCTGTCGTGCTGGGGATAGAGCAT 248 || |||||| |||| | |||||| | | | ||| ||| | |||| ||||| | | | Sbjct 144 CCCTGGCCGAAAGGCCCGGGTAA-CCCGCTGAACGTTCT-TAGTGCCAGGGATTGGGGCT 201 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| | |||||||||| ||||| | | ||| || | Sbjct 202 TGCAATTGTTCCCCATGAACGAGGAATTTCCAGTAAGCGCGAGTCATAATCTCGCATTAA 261 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 262 TTACGTCCCTGCCCTTTGTA 281 >seq6850 Length=7053 Score = 176 bits (194), Expect = 9e-42 Identities = 234/316 (74%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAG--CCAGGCCCGCTTTGGCGGGTCGCCGG--CTTC 75 ||||||||| || ||| |||||||| |||| | ||| | | | ||| |||| Sbjct 6435 GAGCGAGACTCTAGCCTACTAAATAGTCCCAGCATTGTTTTCACTGTGCTGCGGTACTTC 6494 Query 76 TTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 |||||| | | |||| | || | ||| || ||||| ||||||||||||||||||| Sbjct 6495 CTAGAGGAATTTTCGGTGTTTAACCGCATGAAA--TTGAG-CAATAACAGGTCTGTGATG 6551 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 ||||||||||| | |||| ||||||||||||||||| | || || || | | | ||| Sbjct 6552 CCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGGTAAAGTCAGCGTG--CGTTTCCT 6609 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 | || |||| | ||||| | || || | || |||| | ||||| | ||||||| Sbjct 6610 TTCTCGAAAGGGATTGGTAAACCGGTGAACGTTTGCCGTGATAGGGATCGGAAATTGCAA 6669 Query 254 TTATTGCTCT-TCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||||| ||| | |||||||||| || ||||| | | ||||||| | |||||||||||| Sbjct 6670 TTATT-TTCTGTGAACGAGGAATTCCAAGTAAATGTGAGTCATCAACTCGCGTTGATTAC 6728 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 6729 GTCCCTGCCCTTTGTA 6744 >seq24204 Length=251 Score = 123 bits (136), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||| |||| ||||| | ||||| || | ||||| ||||||||||||| ||| Sbjct 57 TTCTTAGAAGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTTTGA 114 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | || || || | | Sbjct 115 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGAAATCAGCGTGT---TTTC 171 Query 192 CTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| | ||| | |||||| | || ||| ||||||| ||||| | | ||| Sbjct 172 CCTGGCCGAATAGGCCCGGGTAACGCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 231 Query 251 CAATTATTGCTCTTCAACGA 270 ||||| || | | | ||||| Sbjct 232 CAATTGTTCCCCATGAACGA 251 >seq44201 Length=202 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| || | ||| ||||| | ||||| || | ||||| |||||| ||||||||| Sbjct 98 CTTCTCAGGGAGACAGACGGCTTCTAGCCGCACGA-GATTGAG-CAATAATAGGTCTGTG 155 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||| |||||||||||||||||||||||||||||||||||| Sbjct 156 ATGACCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946721019904