Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq50065 87.8 6e-15 seq6850 78.8 3e-12 seq48442 77.0 1e-11 >seq50065 Length=546 Score = 87.8 bits (96), Expect = 6e-15 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 13 TCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGAG 72 ||||||||||||||| ||| ||| ||||||| ||| | ||| || ||| | | | Sbjct 317 TCTCGCAGTCAAGCTAGCTTATGCCTTTACACTAACCTCACGATGTCCGACCGTGATTAT 376 Query 73 GGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCA 132 |||||| | || |||||||||| ||| ||| | |||| || ||| |||||||||| Sbjct 377 CTAACCTTCGTGCTCCTCCGTTACTCTTTTGGA-GAAGACCG-CCAAGTCAAACTACCCA 434 Query 133 CCAGGCACTGTCCCCAACCCAGATCATGGGCC 164 ||| |||||||| | ||| ||| | ||||| Sbjct 435 CCAAACACTGTCCTCGGCCCGGATAACGGGCC 466 >seq6850 Length=7053 Score = 78.8 bits (86), Expect = 3e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| |||||| ||| ||||| ||| | ||||| ||| |||| ||||||||| || Sbjct 3015 TCGTTAATCCATTCATGCGCGTCGGGACTCATCCGACGAGGCATTTGGCTACCTTAAGAG 2956 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 || |||||||| ||||||||||| | |||| Sbjct 2955 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 2923 >seq48442 Length=621 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| |||||| ||| ||||| ||| | ||||| ||| |||| ||||||||| || Sbjct 533 TCGTTAATCCATTCATGCGCGTCGGGACTCATCCGACGAGGCATTTGGCTACCTTAAGAG 592 Query 446 GGTTATAGTTACCACCGCCGTTTAC 470 || |||||||| ||||||||||| Sbjct 593 AGTCATAGTTACTCCCGCCGTTTAC 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701539130368