Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15086 425 2e-116 seq7355 352 9e-95 seq16818 224 3e-56 seq42468 143 8e-32 seq33099 118 3e-24 seq30695 95.1 4e-17 seq24233 89.7 2e-15 >seq15086 Length=10902 Score = 425 bits (470), Expect = 2e-116 Identities = 426/544 (78%), Gaps = 42/544 (8%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 1533 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 1474 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1473 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTGT 1414 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1413 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 1354 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG-- 237 |||| | ||||||||||| |||||||| |||||| ||||||| || | |||||| Sbjct 1353 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATTCGTCGCCGGT 1294 Query 238 GCT-CAAGGCCATGCGAT--TCGTTAA-GTTATTATGAATCACCAA----------GGA- 282 ||| ||| || |||||| ||| || |||||| || ||||||| ||| Sbjct 1293 GCTAGAAGACCGTGCGATCAGCGTCAAGGTTATTCAGAGTCACCAAAGCAAACGATGGAC 1234 Query 283 ----GCCCCGAAGGG--------CGTTGGTTTTTTATCTAATAA----ATACACCCCTTC 326 | | |||| | || | | |||| ||||||||| || | ||| || Sbjct 1233 GAACGGCGCGAACCGCCCGCCACCGATTGGTTTTGATCTAATAAAAGCATTCCTCCCATC 1174 Query 327 CGAAGTCGGGGTT---TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-A 382 ||||| || || |||||||||||||||||||||||||| |||||||| || | Sbjct 1173 TCTGGTCGGAATTCTGGTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAA 1114 Query 383 GTA-AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 || ||||| ||| || |||| ||||||||||||||||||||||||| ||||||| Sbjct 1113 ATATGGGTACAATCTAAGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCAC--CT 1056 Query 442 TAGATTGCT-TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 500 ||| | | | | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1055 TAGTTCGGTATGTACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTG 996 Query 501 GCAG 504 |||| Sbjct 995 GCAG 992 >seq7355 Length=4333 Score = 352 bits (390), Expect = 9e-95 Identities = 391/512 (76%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 3179 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTCTCGTCACTACCT 3237 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | || || |||||||||||||||||||||||| ||||| || || || ||| || Sbjct 3238 CCTCATTCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCATCCTTAGACGTAGTGGCCATT 3297 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| || |||||||| ||||||||| |||| ||||||||||| | ||||||||| Sbjct 3298 TCTCAGGCCCCTTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTCAAAACCATGGTA 3357 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || |||||||||||| |||||| |||||| | | || || | ||||||| Sbjct 3358 GTCAGATACACTACCATCGAAAATTGATAAGGCAGATACTCAAAAGACACGTCGCCGGTA 3417 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC-CCCGAAGGGCGTTGG 299 | || || |||||| | | ||||||| ||| ||| ||| | | ||||| | || | Sbjct 3418 CGAGACCGTGCGATCAGCTGAGTTATTCTGAGTCAGCAAAAAACGACCGAA-GCCGCCTG 3476 Query 300 TTTTTTATCTAATAAATACACCCCTTC--CGAAGTC-GGGGTTTTTAGCATGTATTAGCT 356 |||| |||||||||| | | | ||| ||| ||| | | ||| ||||||||||||| Sbjct 3477 GTTTTGCTCTAATAAATGCGCTCTTTCCGCGAGGTCAGAGCATTTGTGCATGTATTAGCT 3536 Query 357 CTAGAATTACCACGGTTATCCATGTAG--TAAGGT--ACTATCAAATAAACGATAACTGA 412 ||||||||||||| |||||||| |||| ||| | | ||||| || | ||| |||| Sbjct 3537 CTAGAATTACCACAGTTATCCAAGTAGAATAAATTTCAAGATCAAGTAGATCATAGCTGA 3596 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTT 472 ||||||||||| ||||| ||||||| || | || | ||||||||||||||||||||||| Sbjct 3597 TTTAATGAGCCGTTCGCGGTTTCACGATA-AAATCGTTTATACTTAGACATGCATGGCTT 3655 Query 473 AATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||| | ||||| || | | | ||||| Sbjct 3656 AATCTTTGAAATAAGCACATCAGTTCAGGCAG 3687 >seq16818 Length=24007 Score = 224 bits (248), Expect = 3e-56 Identities = 383/546 (70%), Gaps = 47/546 (9%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||| ||||| | || | | ||| || ||| || ||||| | |||| | | Sbjct 20860 GTTCTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTACCATTATTTTTCTTCACCAGC 20801 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGG----TAG 115 |||||||| ||||| ||||||||||||| |||| || ||||| |||||| || || Sbjct 20800 TCCCCGTGCCGGGAGTGGGTAATTTGCGTGCCTACTACCTTCTTTGGATATGAATGATAT 20741 Query 116 CCGTT----TCTCAGGCTCCCTCTCCGGAAT------CGAACCCTAATTCCCCGTTACCC 165 || | | | | || | ||| |||||| | ||||||||||| || Sbjct 20740 TCGATAATATATGATATTCGATAATATAAATGATAATCGAACCATGATTCCCCGTTATCC 20681 Query 166 GTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAAT 225 || | |||||||||| | ||||||||||| |||||||| |||||| ||||||| Sbjct 20680 ATTACTGCCATGGTAGGGGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAA 20621 Query 226 GAACCATCGCCGGCTC---AAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAAG 280 | | ||||||| | ||| || ||||||| ||| | |||||| || ||||||| Sbjct 20620 AATTCGTCGCCGGTGCTAGAAGACCGTGCGATTAACGTAAGGTTATTCAGAGTCACCAAA 20561 Query 281 GAGCCCCGAAGGGCG-----------TTGGTTTTTTATCTAATAAATACACCCCTTCCGA 329 || | || || || |||||||| || ||||||| || ||| || Sbjct 20560 GAAAAC-GATGGACGCTCCCCAACGATTGGTTTTG-ATATAATAAAAGCATTCCTCCCAT 20503 Query 330 A----GTCGGGGTTTTTA---GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 ||||| || | | | ||||||||||| |||||||| || |||||||| ||| Sbjct 20502 CTCTGGTCGGAATTCTGATTTGTATGTATTAGCTTTAGAATTAATACAGTTATCCAAGTA 20443 Query 383 ---GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 || ||||| ||| || |||| ||||||||||||| ||||||||||| ||||||| Sbjct 20442 AATGTG-GGTACAATCTAAGAAACCATAACTGATTTAACGAGCCATTCGCGGTTTCACCT 20384 Query 440 TATAGATTGCT-TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 || | | | | | |||| |||| || | |||||||||||||| |||| ||||||||||| Sbjct 20383 TA--GTTCGGTATGTACTGAGACCTGAACGGCTTAATCTTTGAAACAATCATATGACTAC 20326 Query 499 TGGCAG 504 |||||| Sbjct 20325 TGGCAG 20320 >seq42468 Length=17674 Score = 143 bits (158), Expect = 8e-32 Identities = 161/215 (75%), Gaps = 28/215 (13%) Strand=Plus/Minus Query 301 TTTTTATCTAATAAA----TACACCCCTTCCGAAGTCGGGGTT----TTTAGCATGTATT 352 |||| |||||||||| | | |||||| ||||| || |||| |||||||| Sbjct 8325 TTTTGATCTAATAAAAGTATTCCTCCCTTCTTTGGTCGGAATTCTGATTTA-CATGTATT 8267 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||||||| ||| || ||||| ||| || |||| ||||| Sbjct 8266 AGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACAATCTAAGAAACCATAAC 8208 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||| | |||||||| || |||||| ||||| Sbjct 8207 CTATTTAATGAGCCATTCACGGTTTCACTTTA---------------GAGACATACATGG 8163 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| ||||||| || Sbjct 8162 CTTAATCTTTGAGACAAGCATATGTCTACTGGTAG 8128 >seq33099 Length=224 Score = 118 bits (130), Expect = 3e-24 Identities = 129/171 (75%), Gaps = 19/171 (11%) Strand=Plus/Minus Query 349 TATTAGCTCTAGAATTACCACGGT---TATCCATGTAGTA-------------AGGTACT 392 ||||||||||||||||||||| || ||| | | ||||| ||||| Sbjct 169 TATTAGCTCTAGAATTACCACAGTTCCTATTCCTATAGTATCCAAGTTAATATGGGTACA 110 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-T 451 ||| | |||| ||||||||||||||| |||||||| |||| || ||| | | | | Sbjct 109 ATCTGAGAAACCATAACTGATTTAATGCGCCATTCGAGGTTTAAC--CTTAGTTCGGTAT 52 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 |||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 51 GTACTGTGTCATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 1 >seq30695 Length=131463 Score = 95.1 bits (104), Expect = 4e-17 Identities = 122/168 (73%), Gaps = 19/168 (11%) Strand=Plus/Plus Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCC-------ATGTAGTAAGG--TACTATCA 396 |||||||||||||||||| || || |||| | || | ||| | ||| ||| Sbjct 72496 ATGTATTAGCTCTAGAATCACTACAGTTACTCTAAAATTATAAAATAATGAATACAATCT 72555 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 || |||| |||||||||| || ||||||||||| ||||||| | | || || | Sbjct 72556 AAGAAACCATAACTGATTCAAGGAGCCATTCGCGGTTTCACCTCA------GTTTGTATT 72609 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||||||||||||||||||| ||||||| || ||| Sbjct 72610 GAGA----CATGGCTTAATCTTTGAGACAAGCGAATGACTATTGACAG 72653 >seq24233 Length=251 Score = 89.7 bits (98), Expect = 2e-15 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 TACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509636220928