Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq11942 113 2e-20 seq25650 82.4 3e-11 >seq11942 Length=323 Score = 113 bits (124), Expect = 2e-20 Identities = 197/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 53733 ATTGCTGCGCCAATGATGGTCACCAATACCGTCGGCGCGGCGCTGTTTATGCGTATATTG 53792 ||||| ||||| | || |||||||| || |||||| |||| | ||||||||||| || Sbjct 310 ATTGCCGCGCCTACAATCGTCACCAACGCCATCGGCGAGGCGATATTTATGCGTATTTTT 251 Query 53793 CTCGATAAACGCGCGATGTTTGAAAAATACACTTCGGCTTTTTCTGCCACTGCGCTGAAA 53852 |||||| || ||||||||| | |||||||| ||||| |||| | | ||||| || Sbjct 250 CTCGATCGCCGAGCGATGTTTAAGAAATACACCTCGGCGTTTTTCGGGAGCGCGCTCAAG 191 Query 53853 GTGGCAGCCTCGACGGAAGGCATTTTGCGCCAGGGGTTTAACGAAGTGAACAGCATGAAA 53912 | || |||| || ||||| |||||| ||||| || || | | |||| | Sbjct 190 ATTGCCGCCTGTACTGAAGGGATTTTGGAGCAGGGCTTCAATCAGGAAAACACCCACCGG 131 Query 53913 GTGGCTCAGGTGCTGTATCTGGAGCTGGATATTGGTGCAGTCGCGATTACCGATCGAGAG 53972 || | ||| | |||| ||||| ||| |||| ||||| ||||||||||| | Sbjct 130 GTTACGCAGACCATTTATCAAACTCTGGACATTAGTGCGGTCGCAATTACCGATCGCCAA 71 Query 53973 AAATTGCTGGCCTTTACCGGAATTGGTGACGACCACCATTTACCCGG 54019 | || || |||| ||| || || || |||| |||| || || Sbjct 70 CGCCTTCTAGCGTTTATCGGCATCGGCGATAACCATTATTTGCCGGG 24 >seq25650 Length=3221 Score = 82.4 bits (90), Expect = 3e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53211 ATGTACGATTTTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGtttttttAGTCATT 53270 ||||| || ||||| |||| || ||| |||| ||||||||||| |||| | |||| || Sbjct 138 ATGTATGAATTTAAATTGGTTTTACTGTTGCTGCAGCAGATGTGTGTTTATCTAGTTATC 79 Query 53271 GCGTGGTTAATGAGTAAAACGCCATTATTCATACCGTTAATGCAGGTCACGGTTCGTCTG 53330 || | || ||||||||||||| | ||||| || || |||| | ||||| || || Sbjct 78 GCTTACCTACTGAGTAAAACGCCTCTGTTCATCCCTTTGGTGCACGGCACGGAGCGCCTA 19 Query 53331 CCGCATAAATTTCTCTGC 53348 |||| | |||| ||| Sbjct 18 TCGCACACGCTTCTGTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175440185744928