Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq1353 120 9e-23 >seq1353 Length=7711 Score = 120 bits (132), Expect = 9e-23 Identities = 256/379 (68%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 2536 ATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCTCTTACTGAACGTCTT 2595 || |||||||| ||| ||||| |||||||| |||| | || || || || Sbjct 5224 ATTGAAGATGGCATGAACGAATCTGACTGGGATGGTTTCGCTTATCAGACCAAAGTACTG 5165 Query 2596 GGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAA 2655 || | |||| | || ||||| || || || | ||||| || || || ||| | Sbjct 5164 GGCGATAAAATCCAGTTGGTGGGCGATGATCTGTTCGTCACCAATACCAAAATCCTGAAG 5105 Query 2656 AAAGGTATTGCAGAACACGC--TGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTA 2713 ||||||| |||| | || |||||||||||||||||||||| ||||||| |||||| Sbjct 5104 GAAGGTATCA-AGAA-AGGCATTGCTAACTCAATCCTTATCAAATTTAACCAGATCGGTT 5047 Query 2714 CTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAG 2773 | |||| ||||| | | || ||| | ||||| ||| | || | || || | | Sbjct 5046 CGCTGACCGAAACGCTAGCGGCCATCAAGATGGCTAAATATGCATGCTATACCACTATCA 4987 Query 2774 TATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTA 2833 | || ||||| || || ||||| ||||| | || ||||| || | || || | | Sbjct 4986 TTTCTCACCGGTCCGGCGAAACCGAAGACGCTACCATCGCCGACCTGGCGGTAGGCAGCG 4927 Query 2834 ACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACC 2893 || || || || ||||| ||||| | ||| | || || | || |||||||||| Sbjct 4926 CGGCAGGCCAGATCAAGACCGGTTCCATCAGTCGTTCCGATCGCGTAGCGAAATACAACC 4867 Query 2894 AATTGCTTCGTATCGAAGA 2912 || | ||||||||||||| Sbjct 4866 AACTAATTCGTATCGAAGA 4848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155944699720992