Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq50200 91.5 2e-13 >seq50200 Length=540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/326 (67%), Gaps = 8/326 (2%) Strand=Plus/Minus Query 196778 TTGTCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836 ||||| |||||||| |||||||| | |||| |||| |||||||| | ||||| || || Sbjct 479 TTGTCCTGTCAGCTCTATCAGCGCTCATGCG-ATATTTTCCTCGGCCTGCCGTTTAATAT 421 Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGC-- 196894 ||| || || |||||| | || ||| ||||||| ||| | || | || | Sbjct 420 CGCCAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTG---CAGGTCTG 364 Query 196895 -GAGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGA 196953 || ||||| ||||| || || || ||| ||||| || || || | |||| || Sbjct 363 TGATTTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGA 304 Query 196954 AGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGA 197013 ||||| | ||| | || || ||||| |||| | || || ||| |||| Sbjct 303 CCTGCAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGC 244 Query 197014 CAGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGC 197073 | | |||| ||| || || || || || ||| ||||||||||| || || || Sbjct 243 GACATTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGC 184 Query 197074 GATTAAAGCCCCGGTGGCTATTTAAG 197099 || ||||| |||||||| |||||| Sbjct 183 AATCAAAGCACCGGTGGCAGTTTAAG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771054708048960