Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq50200 91.5 2e-13
>seq50200
Length=540
Score = 91.5 bits (100), Expect = 2e-13
Identities = 218/326 (67%), Gaps = 8/326 (2%)
Strand=Plus/Minus
Query 196778 TTGTCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836
||||| |||||||| |||||||| | |||| |||| |||||||| | ||||| || ||
Sbjct 479 TTGTCCTGTCAGCTCTATCAGCGCTCATGCG-ATATTTTCCTCGGCCTGCCGTTTAATAT 421
Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGC-- 196894
||| || || |||||| | || ||| ||||||| ||| | || | || |
Sbjct 420 CGCCAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTG---CAGGTCTG 364
Query 196895 -GAGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGA 196953
|| ||||| ||||| || || || ||| ||||| || || || | |||| ||
Sbjct 363 TGATTTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGA 304
Query 196954 AGAACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGA 197013
||||| | ||| | || || ||||| |||| | || || ||| ||||
Sbjct 303 CCTGCAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGC 244
Query 197014 CAGTATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGC 197073
| | |||| ||| || || || || || ||| ||||||||||| || || ||
Sbjct 243 GACATTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGC 184
Query 197074 GATTAAAGCCCCGGTGGCTATTTAAG 197099
|| ||||| |||||||| ||||||
Sbjct 183 AATCAAAGCACCGGTGGCAGTTTAAG 158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771054708048960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |