Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_033778.1 Length=111453 Score E Sequences producing significant alignments: (Bits) Value seq13955 125 5e-24 seq27945 86.0 4e-12 >seq13955 Length=3322 Score = 125 bits (138), Expect = 5e-24 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 26371 GATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACCG 26430 ||||| | || || ||||||||||||||||||| |||| | || || ||||||||||| Sbjct 3064 GATGACGCGAGGATGTGTAAAATTTGTTATAATGCAGAATTGGGAGTAGTATTTTTACCA 3005 Query 26431 TGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTGT 26490 ||||| ||||| || || ||| |||||||||| || || |||| || |||| |||| || Sbjct 3004 TGTGGACATATGGTTGCTTGTGTTAAATGTGCTCCTGGCATGACGACTTGTGCAGTATGC 2945 Query 26491 CGTAAACCAGTCAGCATGA 26509 | ||||| ||||| |||| Sbjct 2944 AGAAAACCTGTCAGTATGA 2926 >seq27945 Length=413252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 26029 ACATTTGAAACATGGCCAAAAGCAATGATGCGAATTAAAGAACAACTTTCAAATGCGGGt 26088 ||||||||||| ||||||||| | ||| || | ||||| ||| | || |||| ||| Sbjct 170140 ACATTTGAAACGTGGCCAAAATCGATGCCGCAGACAAAAGAGCAATTAGCAGATGCTGGT 170081 Query 26089 tttttttATTCAGGAAATGGAGATAAAGTATTATGTTATCAATGTGGTGGTTCTATAAAT 26148 || | |||| | ||| | || ||| || || || ||| | ||||| || | |||| Sbjct 170080 TTCTATTATACTGGACAGGGTGATCAAACTTTGTGCTATTATTGTGGCGGAGGTTTAAAG 170021 Query 26149 AATTTTGAATTACATGACGATCCATGGATACGACATGCAAAAGAATATCCAAATTGTTTA 26208 ||| || | | || ||||| ||| || |||||||||| | | || || || Sbjct 170020 GATTGGGAGCCAGAAGATGATCCGTGGGAACAACATGCAAAATGGTTCTCTAAGTGCTTT 169961 Query 26209 TATGTATTTCTTGTTAAAGGACAAGATTATATAAATA 26245 ||| | || | || |||| ||||||||| |||||| Sbjct 169960 TATTTGTTAATGGTACAAGGTCAAGATTATGTAAATA 169924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356305074657072