Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq322 154 2e-35 seq973 75.2 2e-11 >seq322 Length=274070 Score = 154 bits (170), Expect = 2e-35 Identities = 94/100 (94%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 54209 GTTTCGTTCGTTATCGGAATTAACCAGACTAATCACTCCACGAACTAAGAACGGCCATGC 54150 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| || || ||||||||||||||||||||| Sbjct 54149 ACCACCACCCATTGATTCGAGAAAGAGCTATCAATCTGTC 54110 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||||| |||||||||| || |||||||||||||||| |||| Sbjct 54456 CATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGCCACCACAGACCTGTTATTG-CTCA 54398 Query 77 AACTTCCATT--GGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 | || | || ||| || || | | |||| | |||||||| Sbjct 54397 ATCT--CGTTACTGCTAGACGCAATTTGTCCATTTAAGAAGC 54358 >seq973 Length=78728 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 210 CGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 29269 CGGCCATGCACCACCACCCATAGATTCGAGAAAGAGTTATCAATCTGTC 29221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786059486