Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq322 145 1e-32 seq1132 122 2e-25 >seq322 Length=274070 Score = 145 bits (160), Expect = 1e-32 Identities = 168/223 (75%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||| Sbjct 54394 AGATTGAG-CAATAACAGGTCTGTGGTGGCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 54452 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || || ||||| || || ||| | || ||||| |||||| || | || | Sbjct 54453 AATGGAAGTATCAACGTGT--ATTTCCTAGAGCGAGAGGTCCGGGTAAACTGCTGAACCA 54510 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || | | || | | | ||| ||||| || |||||| Sbjct 54511 CTTTCATGCTTGGGATTGTGAACTGAGACTGTT-CACATAAACTTGGAATTCCCAGTAAG 54569 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 54570 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 54612 >seq1132 Length=42948 Score = 122 bits (134), Expect = 2e-25 Identities = 163/223 (73%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||| |||||||||||||||||| | | ||||||||||||| Sbjct 30376 AGATTGAG-CAATAACAGGTATGTGATGCCCTTAGATGTAATACTCTGCACGCGCGCTAC 30434 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || |||||||| || || | ||| |||||||||||| | | || | Sbjct 30435 AGTGAAAGTATCAACGAGT--ATTTCCAAGACCGAGAGGTCTGGGTAAACCGCTAAACCA 30492 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | || ||||| | ||||| Sbjct 30493 CTTTCATGCTTGGGATTGTGAACTGTAACTGTT-CACATGAAATTGGAATTTCCAGTAAA 30551 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | |||| |||||| || ||||||||||||| Sbjct 30552 TGTGTGTCATTAACACGAAATGATTATGTGCCTGCCCTTTGTA 30594 Score = 100 bits (110), Expect = 5e-19 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 115 CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 |||||||||||||||| ||||||||||||| |||| | |||| || |||||| ||| || Sbjct 119 CAATAACAGGTCTGTGGTGCCCTTAGATGTCCTGGCCTGCACACGTGCTACAATGAAAGT 178 Query 175 GCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGC 234 |||| || | | ||| |||| |||| || ||| | | || | || || ||| Sbjct 179 ATTAACGTGTACTT--CCTAGGCCTTGTGGTCCGGTTAAACCGCTGAACCACTTTCATGC 236 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA 294 | ||||| | | | | ||| | | | | | || ||||| || ||||| | | |||| Sbjct 237 TTGGGATTGTGAACTACAA-CAGTTCACATGAAATTGGAATTCCCAGTAAATGTGAGTCA 295 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | ||| |||||| || ||||||||||||| Sbjct 296 TTAACTCGCAATGATTATGTGCCTGCCCTTTGTA 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182893568