Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq973 259 2e-66 seq322 217 5e-54 >seq973 Length=78728 Score = 259 bits (286), Expect = 2e-66 Identities = 149/153 (97%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 17965 CTCGTTAATCCATTCATGCGCGTCACTAATTATATGACGAGGCATTTGGCTACCTTAAGA 17906 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 17905 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTTTGACATTC 17846 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| ||||||| Sbjct 17845 AGAGCACTGGGCAGAAATCACATTGTGTCAACA 17813 Score = 241 bits (266), Expect = 4e-61 Identities = 145/153 (95%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38632 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 38573 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||| |||||||||||||||||| |||| |||||||||||| |||||| Sbjct 38572 GAGTCATAGTTACTCTCGCCGTTTACCCGCGCTTACTTGATTTTCTTCACTTTAACATTC 38513 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||| |||||||||||| ||||||| Sbjct 38512 AGAGCACTGGGAAGAAATCACATTTTGTCAACA 38480 Score = 178 bits (196), Expect = 4e-42 Identities = 167/214 (78%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA 231 ||||| ||| || | ||||||| |||| ||||| |||||||||||||| | | | Sbjct 54104 GTTCCACTTAATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAA 54045 Query 232 A--ACGG-----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCG 278 | || | ||||||||||| |||||||||| | ||| | ||| | | Sbjct 54044 ATAACCGAAGTTATCTATCTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCA 53985 Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT 338 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 53984 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCT 53925 Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 ||||||||||||||||||||||| || ||||||| Sbjct 53924 TGGCTGTGGTTTCGCTAGATAGTTGACAGGGACA 53891 Score = 174 bits (192), Expect = 5e-41 Identities = 119/134 (89%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| | ||| | ||| | | |||||||||||||||||| Sbjct 19054 CTCCCACTTATGCTACACCTCTTATGTCTCCTTACACTGCCAGACTAGAGTCAAGCTCAA 18995 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 18994 CAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 18935 Query 357 ATAGTAGATAGGGA 370 |||||||||||||| Sbjct 18934 ATAGTAGATAGGGA 18921 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 54409 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 54350 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||||||||| ||||||| Sbjct 54349 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAATGTC 54303 >seq322 Length=274070 Score = 217 bits (240), Expect = 5e-54 Identities = 126/130 (97%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58927 CACTAATTAGATTACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 58868 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58867 TACCCGCGCTTACTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 58808 Query 524 TGCGTCAACA 533 || ||||||| Sbjct 58807 TGTGTCAACA 58798 Score = 170 bits (188), Expect = 6e-40 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 381 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGA 440 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 69372 CTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGATGCATTCGGCTACCTTAAGA 69313 Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||| ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 69312 GAGCCATAGTTACTCTGGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTT 69261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635170468288