Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq322 369 1e-99 >seq322 Length=274070 Score = 369 bits (408), Expect = 1e-99 Identities = 400/518 (77%), Gaps = 27/518 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| | || | | | ||| ||||| | |||||||||| Sbjct 67088 GTACTCATTCCAATTACAGGGCCT------GTCTTTTATTGTTATTTTTCGTCACTACCT 67035 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||| |||| ||||||||| ||||||||||||||||||| ||||| |||||||| Sbjct 67034 CCCCGAACTGGGAGTGGGTAATTAACGCGCCTGCTGCCTTCCTTAAATGTGATAGCCGTT 66975 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||| ||||| || |||||||||||||||||| ||||||||| Sbjct 66974 TCTCAGGCTCCCTCTCCGGAAACGAACGCTGATTCCCCGTTACCCGTTGCAACCATGGTA 66915 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | || ||| |||||||| ||||||||||||||||| |||||| || | ||| ||| Sbjct 66914 GTCCTATATACTACCATCAAAAGTTGATAGGGCAGACATTTGAGAGATCTGTCGTCGGTA 66855 Query 241 CAAGGCCATGCGATTCGTTAAGTTAT-TA----TGAATCA--CCAAGGAGCCCCGAAGGG 293 | | |||| ||| || ||||||| || | || || || || | | | Sbjct 66854 CGGGACCATACGA-TCTGCAAGTTATCTAGAGTTCAACCAATATAACGATCTTGCGATCG 66796 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTT--TTTAGCATGT 349 | |||||||| | ||||||| ||| || |||| ||| | ||| ||| |||||| Sbjct 66795 C-TTGGTTTTAGCT-TAATAAAAGCACATGTTTCGAAAGGTCCGTGTTTATTTTGCATGT 66738 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-GT--ACTATCAAATAAACGAT 406 ||||||| |||||||||||| |||||||| |||||| || || ||| | ||| || Sbjct 66737 ATTAGCTTTAGAATTACCACAGTTATCCA---AGTAAGTGTTAACGATCTATGGAACCAT 66681 Query 407 AACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCA 466 ||||||| ||||||||| || || |||||||| | || || || |||||||||||||| Sbjct 66680 AACTGATATAATGAGCCTTTTGCGGTTTCACT-TTTAATTTTTTTGTACTTAGACATGCA 66622 Query 467 TGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| ||||||||||| Sbjct 66621 TGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 66584 Score = 244 bits (270), Expect = 3e-62 Identities = 186/219 (85%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 53321 GTACTCATTCCAATTACAGGGCCTCGGATATGAGTCCTGTATTGTTATTTTTCGTCACTA 53262 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 53261 CCTCCCCGAACTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 53202 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATG 177 ||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||| Sbjct 53201 GTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGTTTCCACCTTACCCGTTGCAACCATG 53142 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| || || |||||||| ||||||||||||||||| Sbjct 53141 GTAGTCCTAGATACTACCATCAAAAGTTGATAGGGCAGA 53103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510372722176