Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1762 477 8e-130
seq925 318 5e-82
seq988 183 2e-41
>seq1762
Length=809008
Score = 477 bits (528), Expect = 8e-130
Identities = 1227/1847 (66%), Gaps = 45/1847 (2%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || ||||| || || | ||| || | | ||| |||||||||||
Sbjct 695477 TCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTT 695418
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCA-TAATTCGGCTC 65196
|| | || || |||| |||| ||||| || || | ||| ||||| ||||| || ||
Sbjct 695417 TTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAG-TAAGTTTGCCGTAATTAGGTTC 695359
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|| || || ||||| || || ||||| || ||||| | ||||||||| ||||||||
Sbjct 695358 TGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCAT 695299
Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316
| ||| | | |||| |||||||| ||||| || ||||| |||| |
Sbjct 695298 TTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTTTG 695239
Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376
|| || ||||||| || | ||||||||| | | ||||| |||| |||
Sbjct 695238 GGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCATATC 695179
Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436
|| ||| || ||||| || |||| | | | ||| ||| | || | || || ||
Sbjct 695178 ATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTGAAA 695119
Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496
||| ||||| || ||||| || ||| || ||||| ||| || ||||| |||||| |
Sbjct 695118 CTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTCATT 695059
Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556
|| || | ||||| || || || || ||||||||||| || | | || ||||| ||
Sbjct 695058 ATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCG 694999
Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616
| || | | | ||| || | ||| || ||| ||||| | ||| | |||
Sbjct 694998 TACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATA---GTTCA--GTC 694944
Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676
| | | ||||||||| | || | | || | || |||||||||| |
Sbjct 694943 GGCTTTTTATC-CCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATA 694885
Query 65677 ACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735
| | ||||| | ||| | || || | || ||||||| || | || || | |
Sbjct 694884 AGTTTCGTA-AGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826
Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795
|||| || || || || || |||| | | ||| | ||||| ||||| || |||
Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGG-ATAG 694767
Query 65796 C-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854
| ||| |||| || | ||| || | |||||| || ||||||||||| |||||||| |
Sbjct 694766 CGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTG 694707
Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914
||||| || | || ||||| | || |||| || ||||| || || ||| |||
Sbjct 694706 AAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAA 694647
Query 65915 TTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACG 65973
|| || ||||| | || | | | | | ||| ||||| | | |||
Sbjct 694646 TTCCGCGTCACGGTCTTAGTGACTTCCTTG-AGGCGTTTAAAATCGTATTTTTTG----- 694593
Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033
|| || || |||||| | ||||||| ||||| | ||||| |||||
Sbjct 694592 -TCTGGTGTA---------ACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGC 694543
Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093
|| ||||||||| || | |||||| |||||||| ||||| | ||||||||| || ||
Sbjct 694542 TACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGT 694483
Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153
||| | |||||||||||||||||| | ||| || |||||||| || | ||| ||||| ||
Sbjct 694482 GCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGT 694423
Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACG 66213
||| ||||| || || || || || |||| |||||| || | ||| | | | |
Sbjct 694422 GCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAG-GCTTTGGGCTTTAACTTTCT 694364
Query 66214 TACC-GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATA 66272
|| || | |||| |||| || | | ||| | | |||||| ||||||||| |
Sbjct 694363 TATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAA 694304
Query 66273 CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTA 66332
||||| | | |||||||| ||||||||||| | |||||||| ||| ||| |
Sbjct 694303 CTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAA 694244
Query 66333 CACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCT 66392
|||| |||||||| ||||||||||| | || || || | ||| | ||||| ||||
Sbjct 694243 CACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCT 694184
Query 66393 CCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTT 66452
|||| | ||| |||||| || || | || ||||| || || || ||||| || |
Sbjct 694183 CCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCT 694124
Query 66453 CCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGA 66512
||| ||| || || || | || ||||| ||||||||||| || || || || || |
Sbjct 694123 CCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTA 694064
Query 66513 CATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGA 66572
| || ||||| ||||||||||| ||||| | || || ||| ||||||| ||||| | |
Sbjct 694063 CGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAA 694004
Query 66573 TGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCG 66632
| | | ||| || |||||| |||||||| | ||||||||||| || | || |
Sbjct 694003 TCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAG 693944
Query 66633 AGATGGCAGCACA---ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689
| || ||||| || ||| ||| |||||||| ||||||||||| | |
Sbjct 693943 AAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCAATGGAGTCGTCGACCA 693887
Query 66690 TGGTCAGGAGGTAGCATGAA-CTAA--GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746
| || | || | |||||| ||| || | ||||| || ||||| | ||||| |
Sbjct 693886 TAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTG---GTAGCGGCAGCAAAGAGTG 693830
Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806
| |||| || || ||||||||| | || | ||||||| || ||||| | ||||
Sbjct 693829 TTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCAT 693770
Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865
| || | || ||||| || || | || ||| ||||| | | | || ||||||||
Sbjct 693769 CTATATCCTCACCATGTATACCAATGGCTACA-CGCATTAACATATGCTGTGGCCGTTCA 693711
Query 66866 ACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTT 66912
|| | | | || | | | ||| ||||| ||||| || |||||
Sbjct 693710 ACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTT 693664
>seq925
Length=3171676
Score = 318 bits (352), Expect = 5e-82
Identities = 510/725 (70%), Gaps = 17/725 (2%)
Strand=Plus/Plus
Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165
|||| ||||| || || ||||| ||||| ||||| ||||| ||||| || | |||| |
Sbjct 2021092 AGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGATT 2021151
Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224
||| || ||| || | ||| |||||| || || || || || || ||||||
Sbjct 2021152 GGGCACGACTTACTGA-CAACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGCC 2021210
Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284
|| ||||| ||||| || ||||| ||||| | ||||||||| || || || |||||
Sbjct 2021211 GCCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACGTTTCAGTCAAGAAGTTCAAGTA 2021270
Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344
|||||||||| ||||||||||| || || || || ||||| ||||| ||||| || |||
Sbjct 2021271 ACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAATG 2021330
Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404
|| || | | || || || || || | ||| | || | || |||||||||
Sbjct 2021331 TATAGCATATTAATTGACACATATATTAAGGACGGCAAACAAAGAGACTATTTGTTCAAT 2021390
Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464
|| || |||||||| || || || ||||| || || |||||||| | |||||| |
Sbjct 2021391 GCAATTGAGACGATGCCTGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCTTGGATTTC- 2021449
Query 61465 AGTACAACGGCTACA---TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521
| ||| | || || ||||||||||| | | |||||||| | || || || ||
Sbjct 2021450 --TTCAAAGTCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTTGAAGGCATA 2021507
Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581
|| || || || ||||| ||||||||||| | ||||||||||| | ||||| ||
Sbjct 2021508 TTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGC 2021567
Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641
| || ||| |||||||||||| ||||| |||||||| | ||||||||||| || |
Sbjct 2021568 TTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATTTCGCGTGT 2021627
Query 61642 TTGCTATTCAAACGCTATCTGGT---GAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698
||| | ||| ||| || || | ||| | || | | ||| ||| | ||| ||
Sbjct 2021628 TTGATGTTCCAAC---ATTTGATACAGAAAC--CCAGCAG-GGAACGTATTATTGAAATC 2021681
Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758
| ||| || || | || ||||| ||||| | || ||||| || || || ||
Sbjct 2021682 ATATCTGAAGCAGTTAAAATTGAACAAGAATTCTTAACAGACGCATTACCTGTAAACCTA 2021741
Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818
|| || ||||||||| | || |||||| | ||||||||||| || ||||| ||| || ||
Sbjct 2021742 ATTGGTATGAATTGTAGTCTCATGTCGGATTATATTGAATTCGTAGCCGATCGTTTGCTG 2021801
Query 61819 GTCGA 61823
|||||
Sbjct 2021802 GTCGA 2021806
>seq988
Length=657169
Score = 183 bits (202), Expect = 2e-41
Identities = 278/390 (71%), Gaps = 12/390 (3%)
Strand=Plus/Plus
Query 85987 GCATTGATCATCGTGTAGAAGTTGTTGATGTGATTCTGAAGTGTTTCGGATGTATGCACC 86046
|| || ||||| ||| ||| || | |||||| | || || || ||||| | |||||
Sbjct 119470 GCGTTAATCATGTTGTGGAACTTATCGATGTGTTGTTGCAGCGTCTCGGACGCCTGCACT 119529
Query 86047 GTCACATGATCGATGATGTTGAATAGGAAGAAACGTTTCAGTAACCATGTCATCATGAAA 86106
||||| ||||| ||||| | |||| ||| | |||| |||||||||||| ||
Sbjct 119530 GTCACCGGATCGTGAATGTTATAGAGGAGGAATGGCTTCAACCGCCATGTCATCATATAA 119589
Query 86107 TTACCGCGATAATTTTCGGCAAGGACACGTGGCATCTTCTCCATAATCATCTGAACACTC 86166
|| |||||||| |||||||| | | || ||||||||||||||||||||||| || ||
Sbjct 119590 TTGCCGCGATAGTTTTCGGCGACAATGCGCGGCATCTTCTCCATAATCATCTGTACGCTA 119649
Query 86167 ATGATGTTGTTAATCTTCAGCAACGAG-GTGGATGCCAACATTGAACTTCGCTGAAATTT 86225
| |||||| || | || |||| | | ||| | ||| || ||||| || ||||| ||
Sbjct 119650 AAGATGTTATTCGTATTGAGCATGGTGAGTGTAGAGCAA-ATCGAACTGCGTTGAAACTT 119708
Query 86226 CAAGTACTTGTTCACATTGGCATACTGGATGCGACGCGGATATACATGTAGACGTGCCA- 86284
|| | | | ||| | ||||| ||||| |||||||||||||| ||||| | || || |
Sbjct 119709 TAAATGCCTATTCTCGTTGGCGTACTGTATGCGACGCGGATAGACATGCAAGCGGGCGAT 119768
Query 86285 ---CAATAGCTTCTTCATTGCATTTGGGATCATTGTTGGTCGATAGGATGACAGTCGAAT 86341
| | |||| | ||||| |||| |||||| || || || || || || ||||
Sbjct 119769 TACCGAAGGCTT----GGTACATTTCGGATAATTGTTCGTGGACAGTATTACCGTGGAAT 119824
Query 86342 TGTTTTGGAATGATACCTTT-GTGTCGGCA 86370
| |||| ||| ||| ||| ||||| |||
Sbjct 119825 TATTTT-GAAAACTACTTTTCGTGTCCGCA 119853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397559249279840
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