Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1762 477 8e-130 seq925 318 5e-82 seq988 183 2e-41 >seq1762 Length=809008 Score = 477 bits (528), Expect = 8e-130 Identities = 1227/1847 (66%), Gaps = 45/1847 (2%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || ||||| || || | ||| || | | ||| ||||||||||| Sbjct 695477 TCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTT 695418 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCA-TAATTCGGCTC 65196 || | || || |||| |||| ||||| || || | ||| ||||| ||||| || || Sbjct 695417 TTTAAACCTGCTTTCCAACCATAAAAATGTATAGAAG-TAAGTTTGCCGTAATTAGGTTC 695359 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || ||||| || || ||||| || ||||| | ||||||||| |||||||| Sbjct 695358 TGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCAT 695299 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| | | |||| |||||||| ||||| || ||||| |||| | Sbjct 695298 TTTTATGGAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACAGTTCGCGTATGTTTTG 695239 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 || || ||||||| || | ||||||||| | | ||||| |||| ||| Sbjct 695238 GGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCATATC 695179 Query 65377 CTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAA 65436 || ||| || ||||| || |||| | | | ||| ||| | || | || || || Sbjct 695178 ATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTGAAA 695119 Query 65437 CTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGT 65496 ||| ||||| || ||||| || ||| || ||||| ||| || ||||| |||||| | Sbjct 695118 CTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTCATT 695059 Query 65497 GTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCG 65556 || || | ||||| || || || || ||||||||||| || | | || ||||| || Sbjct 695058 ATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCG 694999 Query 65557 CAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGTC 65616 | || | | | ||| || | ||| || ||| ||||| | ||| | ||| Sbjct 694998 TACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATA---GTTCA--GTC 694944 Query 65617 GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAA 65676 | | | ||||||||| | || | | || | || |||||||||| | Sbjct 694943 GGCTTTTTATC-CCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATA 694885 Query 65677 ACTATCGTACACTCCCTCCTCCTTG-GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAAT 65735 | | ||||| | ||| | || || | || ||||||| || | || || | | Sbjct 694884 AGTTTCGTA-AGGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGT 694826 Query 65736 AAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATAC 65795 |||| || || || || || |||| | | ||| | ||||| ||||| || ||| Sbjct 694825 AAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGG-ATAG 694767 Query 65796 C-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGC 65854 | ||| |||| || | ||| || | |||||| || ||||||||||| |||||||| | Sbjct 694766 CGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTG 694707 Query 65855 AAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAA 65914 ||||| || | || ||||| | || |||| || ||||| || || ||| ||| Sbjct 694706 AAATTAGATTTCTTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAA 694647 Query 65915 TTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTTCGAAATCAAAATGTTTAGGACG 65973 || || ||||| | || | | | | | ||| ||||| | | ||| Sbjct 694646 TTCCGCGTCACGGTCTTAGTGACTTCCTTG-AGGCGTTTAAAATCGTATTTTTTG----- 694593 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || || || |||||| | ||||||| ||||| | ||||| ||||| Sbjct 694592 -TCTGGTGTA---------ACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGC 694543 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||||||||| || | |||||| |||||||| ||||| | ||||||||| || || Sbjct 694542 TACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGT 694483 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 ||| | |||||||||||||||||| | ||| || |||||||| || | ||| ||||| || Sbjct 694482 GCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATATAACATATACGGTGT 694423 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACG 66213 ||| ||||| || || || || || |||| |||||| || | ||| | | | | Sbjct 694422 GCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAG-GCTTTGGGCTTTAACTTTCT 694364 Query 66214 TACC-GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATA 66272 || || | |||| |||| || | | ||| | | |||||| ||||||||| | Sbjct 694363 TATTAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAA 694304 Query 66273 CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTA 66332 ||||| | | |||||||| ||||||||||| | |||||||| ||| ||| | Sbjct 694303 CTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCAA 694244 Query 66333 CACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCT 66392 |||| |||||||| ||||||||||| | || || || | ||| | ||||| |||| Sbjct 694243 CACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGCT 694184 Query 66393 CCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTT 66452 |||| | ||| |||||| || || | || ||||| || || || ||||| || | Sbjct 694183 CCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCT 694124 Query 66453 CCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGA 66512 ||| ||| || || || | || ||||| ||||||||||| || || || || || | Sbjct 694123 CCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCTA 694064 Query 66513 CATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGA 66572 | || ||||| ||||||||||| ||||| | || || ||| ||||||| ||||| | | Sbjct 694063 CGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAA 694004 Query 66573 TGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCG 66632 | | | ||| || |||||| |||||||| | ||||||||||| || | || | Sbjct 694003 TCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTAG 693944 Query 66633 AGATGGCAGCACA---ATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGA 66689 | || ||||| || ||| ||| |||||||| ||||||||||| | | Sbjct 693943 AAATCAATGCACATTGATGTGCCGATGT---AAATATGCCATCAATGGAGTCGTCGACCA 693887 Query 66690 TGGTCAGGAGGTAGCATGAA-CTAA--GTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | || | || | |||||| ||| || | ||||| || ||||| | ||||| | Sbjct 693886 TAGTTAATAGAAAACATGAAGATAATTGTGGCTGTTTG---GTAGCGGCAGCAAAGAGTG 693830 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 | |||| || || ||||||||| | || | ||||||| || ||||| | |||| Sbjct 693829 TTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTGTCGATTGCCGCAT 693770 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCCGTTCG 66865 | || | || ||||| || || | || ||| ||||| | | | || |||||||| Sbjct 693769 CTATATCCTCACCATGTATACCAATGGCTACA-CGCATTAACATATGCTGTGGCCGTTCA 693711 Query 66866 ACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTT 66912 || | | | || | | | ||| ||||| ||||| || ||||| Sbjct 693710 ACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTT 693664 >seq925 Length=3171676 Score = 318 bits (352), Expect = 5e-82 Identities = 510/725 (70%), Gaps = 17/725 (2%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 |||| ||||| || || ||||| ||||| ||||| ||||| ||||| || | |||| | Sbjct 2021092 AGGCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGATT 2021151 Query 61166 GGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||| || ||| || | ||| |||||| || || || || || || |||||| Sbjct 2021152 GGGCACGACTTACTGA-CAACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGCC 2021210 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || ||||| ||||| || ||||| ||||| | ||||||||| || || || ||||| Sbjct 2021211 GCCTCGGATGGTATTGTAAATGAAAATTTGGTAGAACGTTTCAGTCAAGAAGTTCAAGTA 2021270 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 |||||||||| ||||||||||| || || || || ||||| ||||| ||||| || ||| Sbjct 2021271 ACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAATG 2021330 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 || || | | || || || || || | ||| | || | || ||||||||| Sbjct 2021331 TATAGCATATTAATTGACACATATATTAAGGACGGCAAACAAAGAGACTATTTGTTCAAT 2021390 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 || || |||||||| || || || ||||| || || |||||||| | |||||| | Sbjct 2021391 GCAATTGAGACGATGCCTGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCTTGGATTTC- 2021449 Query 61465 AGTACAACGGCTACA---TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | ||| | || || ||||||||||| | | |||||||| | || || || || Sbjct 2021450 --TTCAAAGTCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTTGAAGGCATA 2021507 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || || || || ||||| ||||||||||| | ||||||||||| | ||||| || Sbjct 2021508 TTCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGC 2021567 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTT 61641 | || ||| |||||||||||| ||||| |||||||| | ||||||||||| || | Sbjct 2021568 TTAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATTTCGCGTGT 2021627 Query 61642 TTGCTATTCAAACGCTATCTGGT---GAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 ||| | ||| ||| || || | ||| | || | | ||| ||| | ||| || Sbjct 2021628 TTGATGTTCCAAC---ATTTGATACAGAAAC--CCAGCAG-GGAACGTATTATTGAAATC 2021681 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 | ||| || || | || ||||| ||||| | || ||||| || || || || Sbjct 2021682 ATATCTGAAGCAGTTAAAATTGAACAAGAATTCTTAACAGACGCATTACCTGTAAACCTA 2021741 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 || || ||||||||| | || |||||| | ||||||||||| || ||||| ||| || || Sbjct 2021742 ATTGGTATGAATTGTAGTCTCATGTCGGATTATATTGAATTCGTAGCCGATCGTTTGCTG 2021801 Query 61819 GTCGA 61823 ||||| Sbjct 2021802 GTCGA 2021806 >seq988 Length=657169 Score = 183 bits (202), Expect = 2e-41 Identities = 278/390 (71%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 85987 GCATTGATCATCGTGTAGAAGTTGTTGATGTGATTCTGAAGTGTTTCGGATGTATGCACC 86046 || || ||||| ||| ||| || | |||||| | || || || ||||| | ||||| Sbjct 119470 GCGTTAATCATGTTGTGGAACTTATCGATGTGTTGTTGCAGCGTCTCGGACGCCTGCACT 119529 Query 86047 GTCACATGATCGATGATGTTGAATAGGAAGAAACGTTTCAGTAACCATGTCATCATGAAA 86106 ||||| ||||| ||||| | |||| ||| | |||| |||||||||||| || Sbjct 119530 GTCACCGGATCGTGAATGTTATAGAGGAGGAATGGCTTCAACCGCCATGTCATCATATAA 119589 Query 86107 TTACCGCGATAATTTTCGGCAAGGACACGTGGCATCTTCTCCATAATCATCTGAACACTC 86166 || |||||||| |||||||| | | || ||||||||||||||||||||||| || || Sbjct 119590 TTGCCGCGATAGTTTTCGGCGACAATGCGCGGCATCTTCTCCATAATCATCTGTACGCTA 119649 Query 86167 ATGATGTTGTTAATCTTCAGCAACGAG-GTGGATGCCAACATTGAACTTCGCTGAAATTT 86225 | |||||| || | || |||| | | ||| | ||| || ||||| || ||||| || Sbjct 119650 AAGATGTTATTCGTATTGAGCATGGTGAGTGTAGAGCAA-ATCGAACTGCGTTGAAACTT 119708 Query 86226 CAAGTACTTGTTCACATTGGCATACTGGATGCGACGCGGATATACATGTAGACGTGCCA- 86284 || | | | ||| | ||||| ||||| |||||||||||||| ||||| | || || | Sbjct 119709 TAAATGCCTATTCTCGTTGGCGTACTGTATGCGACGCGGATAGACATGCAAGCGGGCGAT 119768 Query 86285 ---CAATAGCTTCTTCATTGCATTTGGGATCATTGTTGGTCGATAGGATGACAGTCGAAT 86341 | | |||| | ||||| |||| |||||| || || || || || || |||| Sbjct 119769 TACCGAAGGCTT----GGTACATTTCGGATAATTGTTCGTGGACAGTATTACCGTGGAAT 119824 Query 86342 TGTTTTGGAATGATACCTTT-GTGTCGGCA 86370 | |||| ||| ||| ||| ||||| ||| Sbjct 119825 TATTTT-GAAAACTACTTTTCGTGTCCGCA 119853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397559249279840