Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013
-12-04] 2,457 sequences; 277,059,195 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq6 230 8e-58
seq1679 129 2e-27
seq1686 118 3e-24
seq1 102 3e-19
>seq6
Length=12171684
Score = 230 bits (254), Expect = 8e-58
Identities = 157/174 (90%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419
||||| ||| | | ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 11535342 GTAGA-AGGTAGATTGGGAGTCTCGTTAATCCATTCATGCGCGTCACTATTT-GATGACA 11535399
Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479
||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 11535400 AGGCATTTGACTACCTTAAGAGAGCCATAGTTACTCCCGCCGTTTACCCACGCTTGCTTG 11535459
Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||| |||| |||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 11535460 AATTTCATCACATTGATATTCAGAGCACTGGGAAGAAATCACATTGCGTCATCA 11535513
>seq1679
Length=328
Score = 129 bits (142), Expect = 2e-27
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 CCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAG 60
Query 515 AAATCACATTGCGTCAACA 533
|||||||||||||||| ||
Sbjct 61 AAATCACATTGCGTCATCA 79
>seq1686
Length=326
Score = 118 bits (130), Expect = 3e-24
Identities = 98/120 (82%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||||||||| ||| ||||||| ||| |||| ||||||||||||||||||||
Sbjct 230 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 171
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||||||| ||||||||| |||||||||| |||| || |||| || | ||||||
Sbjct 170 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 111
>seq1
Length=27400720
Score = 102 bits (112), Expect = 3e-19
Identities = 108/144 (75%), Gaps = 14/144 (10%)
Strand=Plus/Plus
Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419
|| ||||| | |||| ||| ||||||| ||||||||| | ||||||||||| |||| |
Sbjct 16507030 GTTGATAGAGGCAGTAGGAGTCTCGTTTCTCCATTCATACACGTCACTAATTGGATGGTG 16507089
Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479
| ||||||||| |||| |||| ||||||||| |||||| |||| |
Sbjct 16507090 A-------TGCTACCTTAGGAGAAACATAATTACTCCCGTCGTTTAGCCGC-------TT 16507135
Query 480 AATTTCTTCACTTTGACATTCAGA 503
||||||||||| |||||||| |||
Sbjct 16507136 AATTTCTTCACATTGACATTTAGA 16507159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635159823136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |