Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6 230 8e-58 seq1679 129 2e-27 seq1686 118 3e-24 seq1 102 3e-19 >seq6 Length=12171684 Score = 230 bits (254), Expect = 8e-58 Identities = 157/174 (90%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||| ||| | | ||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 11535342 GTAGA-AGGTAGATTGGGAGTCTCGTTAATCCATTCATGCGCGTCACTATTT-GATGACA 11535399 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 11535400 AGGCATTTGACTACCTTAAGAGAGCCATAGTTACTCCCGCCGTTTACCCACGCTTGCTTG 11535459 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| |||| |||| ||||||||||||||| |||||||||||||||||| || Sbjct 11535460 AATTTCATCACATTGATATTCAGAGCACTGGGAAGAAATCACATTGCGTCATCA 11535513 >seq1679 Length=328 Score = 129 bits (142), Expect = 2e-27 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1 CCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAG 60 Query 515 AAATCACATTGCGTCAACA 533 |||||||||||||||| || Sbjct 61 AAATCACATTGCGTCATCA 79 >seq1686 Length=326 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 230 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 171 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 170 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 111 >seq1 Length=27400720 Score = 102 bits (112), Expect = 3e-19 Identities = 108/144 (75%), Gaps = 14/144 (10%) Strand=Plus/Plus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 || ||||| | |||| ||| ||||||| ||||||||| | ||||||||||| |||| | Sbjct 16507030 GTTGATAGAGGCAGTAGGAGTCTCGTTTCTCCATTCATACACGTCACTAATTGGATGGTG 16507089 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 | ||||||||| |||| |||| ||||||||| |||||| |||| | Sbjct 16507090 A-------TGCTACCTTAGGAGAAACATAATTACTCCCGTCGTTTAGCCGC-------TT 16507135 Query 480 AATTTCTTCACTTTGACATTCAGA 503 ||||||||||| |||||||| ||| Sbjct 16507136 AATTTCTTCACATTGACATTTAGA 16507159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635159823136