Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq40 120 2e-23 >seq40 Length=949583 Score = 120 bits (132), Expect = 2e-23 Identities = 233/338 (69%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 6597 GATTAAGTGGAAAGGACGATTCTTTGCACTCATGAGTTGGCGCCTTCGCGAGTACTTTGT 6656 |||||| || |||| |||||||| | || ||||||||||| || | ||||| ||||| Sbjct 1649 GATTAAATG---AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGT 1705 Query 6657 ATTTACTGAATATTTAA-TCAAGAAGAATGTGATCCCACTATTCAAAGGATTGACCATGG 6715 | |||| || ||||||| | || || | | || |||| || |||||||| | || |||| Sbjct 1706 AATTACGGAGTATTTAATTAAATAACATTATGTTCCC-CTTTTCAAAGGGATTACAATGG 1764 Query 6716 CGGATGATCAAACGACTTTGATCAAGAAGATGATTCAGAACACAAGTGGACAAGGAGGAA 6775 | |||||| ||| ||||||| ||||| || | | | || || ||||| Sbjct 1765 CAGATGATTTAACAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGG 1824 Query 6776 ATGATTACAAGCATATAACGTTTGCGAATCACATCGATTACGAAAAGTGGAA---CAATT 6832 ||| ||| | || | | || ||| | || ||||| ||||| ||||| | || Sbjct 1825 CTGACTACGGGATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCAT- 1883 Query 6833 TCCAAAGATATGAATCAACAGCTCCTGTTTTCCGGGTGATTGGACAATTTTTTGGTCTAC 6892 |||||| || ||| | |||| |||| ||||| || ||||||| || | | Sbjct 1884 --CAAAGAGGAGAGGGAAC-GATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGC 1940 Query 6893 CGAACTTATTTGTGCGAACGCATGAATTCTTTGAAAAA 6930 | |||||| | || ||||||||||||||||| | ||| Sbjct 1941 CAAACTTAATCGTAAGAACGCATGAATTCTTTAATAAA 1978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36181399873236