Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq412 87.8 3e-12 seq355 87.8 3e-12 seq282 84.2 3e-11 >seq412 Length=1338 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 378 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 437 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 438 CAGAGGAGCCAAATTT 453 >seq355 Length=1470 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 1042 GTAGTTCAGTCGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGTCCCGT 1101 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 1102 CCGTTCCGCCA 1112 >seq282 Length=1752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4206 TGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||| ||||||||| ||||||||||||| |||||| | ||||||||||| | Sbjct 1117 TGTAGTTCAGTCGGTAGAACGCCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 1058 Query 4266 CAGGGTCGCCACATTT 4281 ||| | |||| |||| Sbjct 1057 CAGAGGAGCCAAATTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771518704004040