Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq516 120 4e-22 >seq516 Length=1145 Score = 120 bits (132), Expect = 4e-22 Identities = 392/609 (64%), Gaps = 29/609 (5%) Strand=Plus/Plus Query 162100 AAAGTAGCACTTATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCTC 162159 ||||| || || || || || | || ||||| ||||| |||||||| || || | || Sbjct 467 AAAGTCGCTCTCATCACCGGCGTTACCGGGCAGGATGGTTCTTACCTGGCAGAGTTCCTG 526 Query 162160 CTTCAGAAAGGATATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCAC 162219 || | ||||| ||| ||| |||||||||| |||||||| ||| | |||||| | Sbjct 527 CTGGAAAAAGGGTATGAAGTACACGGTATTAAACGTCGTGCGTCTTCTTTCAACACCGAA 586 Query 162220 AGAATTGACCATATCTTTGA-------------------CCGCA--TCACTCTCCATTAT 162258 | | || ||||| | | | ||| | || ||| || || Sbjct 587 CGTGTGGATCATATTTATCAGGATCCTCACGCGGCGAACCCGAAATTCCATCTGCACTAC 646 Query 162259 GGAGACCTTACCGATGCTTTGAGTATCGTATC--TATTATTAAAACAGTTCAACCAGATG 162316 || ||||| |||||| | | | | | | | ||| | | ||| || || |||| Sbjct 647 GGCGACCTGACCGATACCTCCA--ACCTGACCCGTATCCTGCAGGAAGTACAGCCGGATG 704 Query 162317 AAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCTGAATACA 162376 || | || ||||| || || ||| ||||| ||| || || || || ||||||| Sbjct 705 AAGTCTACAACCTGGGCGCGATGAGCCACGTAGCGGTCTCCTTCGAATCCCCGGAATACA 764 Query 162377 CAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTTCTTGGTA 162436 | || | || || |||| || || | |||| ||||| |||| | || || Sbjct 765 CCGCCGACGTTGATGCTATGGGTACGCTGCGTCTGCTGGAAGCAATCCGCTTCCTCGGCC 824 Query 162437 TGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCA 162494 | || | | ||| | ||||||| || |||| |||||| || || || || || Sbjct 825 TTGAGAAGAAAACGC--GCTTCTACCAGGCATCCACCTCTGAGCTGTACGGTCTGGTGCA 882 Query 162495 GGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAA 162554 ||| | || ||||||||||||||||| | || || || || || |||| || || || Sbjct 883 GGAAATCCCACAGAAAGAAACCACTCCGTTCTACCCGCGCTCTCCGTATGCGGTAGCAAA 942 Query 162555 ACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAG 162614 ||| || | | |||||||| | |||||| | ||| ||| | ||| | |||| || Sbjct 943 ACTGTACGCCTACTGGATCACCGTGAACTACCGTGAATCCTACGGCATGTACGCCTGTAA 1002 Query 162615 CGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGAT 162674 ||| || || ||||| |||||| | || | || || || ||||| || ||||| || Sbjct 1003 CGGCATCCTGTTCAACCACGAATCTCCGCGTCGCGGCGAAACCTTCGTGACCCGCAAAAT 1062 Query 162675 CGTCCGAGC 162683 | ||| || Sbjct 1063 CACCCGCGC 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691437963559320