Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq40 192 5e-45 seq18 109 5e-20 >seq40 Length=949583 Score = 192 bits (212), Expect = 5e-45 Identities = 522/787 (66%), Gaps = 25/787 (3%) Strand=Plus/Plus Query 8234 GATTCTTCGCTCTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAA 8293 ||||||| |||| ||| ||| || ||||| || || |||||||| || ||||||| Sbjct 1663 GATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTATTTAA 1722 Query 8294 TTAAATTACATTTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAG 8353 |||||| ||||| || || || ||| || | || |||||||||||| | |||| Sbjct 1723 TTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGAT-TTAACAACT 1781 Query 8354 TTGTTaaa-aaaaTGCTCGATACATCTAATGGACAAGGGTTAGACGTTTACGACTATATC 8412 ||| ||| ||| |||| ||||| || || ||||| | | | |||| ||| Sbjct 1782 TTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGATCATC 1841 Query 8413 ACAATGGCAAATCATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAAC 8472 | || || ||| ||||||||||||| ||||||||| ||||||||||||||||| ||| Sbjct 1842 TCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAGAGG-GAAC 1900 Query 8473 AATCCTGTCTTCACTGTCATGGGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACA 8532 ||||| | || | || ||||| | ||| |||||| |||| | | || |||||| Sbjct 1901 GATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAGAACG 1960 Query 8533 CATGAGTTCTTTGAAAAAAGCTTGATCTATTACAACAACAGAACAGAC--CTAATGTATG 8590 ||||| |||||| | |||| | ||||||| || | ||| | ||| ||||| || Sbjct 1961 CATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATGATTG 2020 Query 8591 TAAGAGATGGGGTTGTTTTGAACAAAGATGATGACACGCC----TGTCTGTTGGAATGGT 8646 | || || ||| | ||||| || | ||||| | || || ||||||||| Sbjct 2021 TTCGAAAT--GGTCGAATTGAA-AATTCT----ACACGGCATATCGTATGCTGGAATGGT 2073 Query 8647 CAG-GCCGGAGGACTAGAGGGGCTGAGACAAAAAGGCTGGAGTATAGTCAACTTACTGGT 8705 ||| | || || | ||| ||| | || ||| ||| ||| | | ||||| | ||| Sbjct 2074 CAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGC 2133 Query 8706 AATCAAGAGAGAGGGTCGAGTCGAGAACACAAGACTGAGCATTCTGGCCCAAGGAGATAA 8765 ||| | || || ||| || ||||||| | | | ||| || |||| ||||| ||||| Sbjct 2134 AATAGAAAGGGAAAGTCAAGATCAGAACACCAAAGTAAGCCTTTTGGCACAAGGGGATAA 2193 Query 8766 TCAAGTCGTTTGCACTCAATACAAACTCCAGAAAACTCGTAC-GACCAGAGAATTAGACA 8824 || || | || || | || | | |||||| | | || || | | || || | Sbjct 2194 CCAGGTTATATGTACCAATTATGTATTGCAGAAATATAGAACAGAAC-GTGAGCTACTAA 2252 Query 8825 TCTGTATTGATAGAGTGTTGCTAAATAAT---GACAAAATTNNNNGAAATATAGAAGAAG 8881 || |||| |||||| || ||||||| || | || || |||| ||| Sbjct 2253 TCAACATTGGTAGAGTAGTGGAAAATAATTCAGAGATCATGCATCGA---ATAGTGAAAG 2309 Query 8882 GAACAAGAAAACTAGGATTATTGATAAACAAGGACGAAACAATAAAATCTGCAGATTATC 8941 ||| | || |||| ||| || || | ||||||| || | || ||||||||| Sbjct 2310 GAATTATTAAGTTAGGTTTAAGTATCAATTATGACGAAATCATTCAGTCGGCAGATTATA 2369 Query 8942 TGAATTACGGAAAGGTCCCAATCTTTCGAGGCAAAATCAAGGGACTAGAATCCAAACGAT 9001 | ||| ||||| |||| || || || || || | || ||||| ||||||| | Sbjct 2370 TCTTTTATGGAAAAATCCCCATAGTTAGATAAAATATAATGGTTTTAGAAACCAAACGGT 2429 Query 9002 GGTCAAG 9008 | || || Sbjct 2430 GATCTAG 2436 >seq18 Length=5623067 Score = 109 bits (120), Expect = 5e-20 Identities = 193/275 (70%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 8236 TTCTTCGCTCTTATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATT 8295 |||||| |||| ||| |||| ||| ||||| || || || || || ||||| | || Sbjct 2777388 TTCTTCTCTCTCATGAGCTGGAGGCTAAGAGAGTATTTTGTGATAACCGAATACCTGATA 2777329 Query 8296 AAATTACATTTCGTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTT 8355 ||||| || || || || | ||| ||| | || ||||||||||| ||| ||| | Sbjct 2777328 AAATTGCACTTTGTGCCATTATTCAAGGGAATCACCATGGCAGATGACTTAACTACACTC 2777269 Query 8356 GTTaaaaaaaTGCTCGATACATCTAATGGACAAGGGTTAGACGT-TTA-CGACTATATCA 8413 | || || | | |||||||| ||||||| || |||| ||| || ||| Sbjct 2777268 ATAAAGAAGCTTTTAGATACATCCTCGGGACAAGCTTT-GACGGATTATCGGAGTTATTT 2777210 Query 8414 CAATGGCAAATCATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACA 8473 | || || ||||||||||||||||| ||||||||| || ||| ||||| | || Sbjct 2777209 CTATAGCTAATCATATAGATTATGAAAAATGGAATGCTCACCAACGAGGAACAGGGAATG 2777150 Query 8474 ATCC-TGTCTTCACTGTCATGGGTCAGTTTCTAGG 8507 |||| ||| |||| ||||||||||| ||| |||| Sbjct 2777149 ATCCATGT-TTCAAGGTCATGGGTCAATTTTTAGG 2777116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41829211637552