Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq40 181 8e-42 seq5 168 5e-38 seq4 91.5 1e-14 >seq40 Length=949583 Score = 181 bits (200), Expect = 8e-42 Identities = 632/971 (65%), Gaps = 24/971 (2%) Strand=Plus/Plus Query 6410 TAAAGGAGGATGGTAGATTCTACTGCCTAATGTCCTGGGCCTTGAGGGAATATTTTGTCG 6469 |||| ||||| ||||||| | |||||| ||| | || || |||||||| Sbjct 1652 TAAATGAGGA----AGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAA 1707 Query 6470 TCACTGAGTATTTGATTAAATTACATTTTATTCCTCTTTTTAAGGGTCTGACTGTCGCTG 6529 | || |||||||| ||||||| ||||| | |||| ||||| || || | || | || | Sbjct 1708 TTACGGAGTATTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAG 1767 Query 6530 ATGACATGACAACACTAATCAAGAAGATGATGGATAATTCTTCAGGACAAGGATTAGATG 6589 |||| | ||||| | | ||||| || |||||| ||| ||||| ||||| | | || Sbjct 1768 ATGATTTAACAACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTG 1827 Query 6590 ATTATTCCAGAGTTTCT-TAT-GCGAACCATTTAGATTATGAGAAGTGGAATAACTATCA 6647 | || | || ||| ||| || || || |||||||||| || |||||| | |||| Sbjct 1828 ACTA--CGGGATCATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCA 1885 Query 6648 GCGTATAGAATCCAACGGGCCTACATTCAGAGTAATGGGACAGTTTTTGGGTTATCCTAA 6707 | ||| |||| ||| || | ||| ||||| | ||||| || | || || Sbjct 1886 AAGAGGAGAGGG-AACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAA 1944 Query 6708 CCTAATATACAGAACTCATGAATTCTTTCAAAAATCTGTGATCTATTATACTCAAAGACC 6767 | |||| ||||| |||||||||||| | ||| | | ||||||||| ||||||||| Sbjct 1945 CTTAATCGTAAGAACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACC 2004 Query 6768 AGA--TCTAATGATGGTAAAAGACAATAAGATAATCAATAAAACAGAGAATGTAGTAGTT 6825 || | ||||||| || | | | || ||| ||| | || | ||| Sbjct 2005 TGACTTTTAATGATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGC 2064 Query 6826 TGGGAAGGGCAAT-TGGGTGGGTTCGAGGGAATTCGACAAAAGGGATGGAGTATATTGAA 6884 ||| | || || | | || || || || ||| | ||| |||||| | | | || Sbjct 2065 TGGAATGGTCAGTGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAA 2124 Query 6885 TGCACTTTCTGTGGAAAGAGAAAG-CAGGAATTTAAATACGAGAGTTACACTACTGGCAC 6943 |||| | | | ||||| ||||| || | || || || | ||| | || |||||| Sbjct 2125 TGCATTGGCAATAGAAAGGGAAAGTCAAG-ATCAGAACACCAAAGTAAGCCTTTTGGCAC 2183 Query 6944 AGGGCGACAACCAAATAATATGTTCCAATTACAAATTACAACCATCTAGGGATTTAGCTG 7003 | || || ||||| | |||||| ||||||| ||| || || ||| | || Sbjct 2184 AAGGGGATAACCAGGTTATATGTACCAATTATGTATTGCAGAAATATAGAACAGAACGTG 2243 Query 7004 AACTA--AATATTAATTTAGAGAGAATTAAATCAAATAATGATTCTATAATGGCAGGTAT 7061 | ||| ||| ||| |||| | | | ||||||| || ||| | || Sbjct 2244 AGCTACTAATCAACATTGGTAGAGTAGTGGA--AAATAATTCAGAGATCATGCATCGAAT 2301 Query 7062 AGACAAAGGTGTTAGTAAATTAGGATTAAAGATCAATAAGGATGAGACAATGCAATCAGC 7121 || ||||| ||| ||| ||||| |||| |||||| | || || | || || || || Sbjct 2302 AGTGAAAGGAATTATTAAGTTAGGTTTAAGTATCAATTATGACGAAATCATTCAGTCGGC 2361 Query 7122 AGACTTCCTGAGTTACGGCAAAGTGCCAATTTTCAGAGGCAATATCAGACCTCTAGAAGA 7181 ||| | | ||| || ||| | || || | ||| ||||| | | ||||| Sbjct 2362 AGATTATATCTTTTATGGAAAAATCCCCATAGTTAGATAAAATATAATGGTTTTAGAAAC 2421 Query 7182 GAAGAGATGGTCAAGGTGTTCATGTGTCACGAATGATCAATTACCTACTTTA-GGAAATG 7240 || | || || || |||||| | | |||||||| | || | || | || |||| Sbjct 2422 CAAACGGTGATCTAGTTGTTCAATTAGTGCTAATGATCAGATGCC-ATTTAATGGTAATG 2480 Query 7241 TCATATCATCTGTGAGCTCTAATGCATTGACTATTTCTCATTTTTCTCCTTCTCCGATAA 7300 | || ||| | | | ||||||||||| |||||| ||||| ||| || || || | Sbjct 2481 TTATCTCAACAATAGGTTCTAATGCATTAACTATTGCTCATCATTCGGTCTCCCCAATTA 2540 Query 7301 ATACCA----TAATACATTATAATTTTGTTGGTAATCTTATTAGGAATCTGTTAGACCTA 7356 |||||| |||||||||||||||||||||| ||| ||||||| ||||| | || | | Sbjct 2541 ATACCATAATTAATACATTATAATTTTGTTGGGAATTTTATTAGAAATCTTCTTGATCAA 2600 Query 7357 CATAATCCTGC 7367 || |||| || Sbjct 2601 CACGATCCGGC 2611 >seq5 Length=15084686 Score = 168 bits (186), Expect = 5e-38 Identities = 312/455 (69%), Gaps = 2/455 (0%) Strand=Plus/Minus Query 8257 TATATGGCTTATTTGGGATCTAGAACCTCTGAGACTACCAGTATCATACAGCCATGGGAG 8316 |||||||||||| | || || | ||| || || | ||||| | ||||| || ||||| Sbjct 1087293 TATATGGCTTATCTAGGCTCCAAAACTTCAGAATCGACCAGCTTGATACATCCGTGGGAA 1087234 Query 8317 AGAGAAAGTAAAATCCCGTTGATTAAGAGAGC-AGCAAAATTAAGAAATGTAATACATTG 8375 | || | |||| | || | |||| | || |||||| ||| || ||||| ||||||| Sbjct 1087233 AAGGAGACTAAAGTTCCTGTTCTTAAATGGGCTAGCAAA-TTACGAGATGTAGTACATTG 1087175 Query 8376 GTTTGTGGAGCCAAATACAAATTTAGCTCTGAGCATATTCTCCATATGTAAGGGATTGAC 8435 ||||||||| || | | | ||||||||| | |||||||| || || |||||||||| Sbjct 1087174 GTTTGTGGAACCCACTTCTAATTTAGCTATCAGCATATTTTCTATTCTCGAGGGATTGAC 1087115 Query 8436 TGGAGAGGAATGGGATTCAGGGACAGTAGGATTTAAGAGAACTGGATGTGGACCTCATCG 8495 |||| | ||||| |||||| | | || ||||| | || ||||| ||||||| ||| Sbjct 1087114 TGGATATAAATGGTCTTCAGGCATTCTGGGTTTTAAACGGACAGGATGCGGACCTCGTCG 1087055 Query 8496 ATACGCATCCTCACGTCAGAGTGCTGGAGGTTACAGTGCGCAATCTCCCGCTAAATTGAC 8555 || ||| | | ||| || || | || || ||||| |||| ||||| Sbjct 1087054 GTATTACTCCAATAGAAAAAGTAATGCTGGCTTTTCTGACCAGTCTCCAGCTATGTTGAC 1086995 Query 8556 TAGGATGACTACAACCACTGATACGATGGGATCCATAAATGAAGATAATTATGATTTCAT 8615 | |||| ||| || || || || | | || ||| ||||||||||||||||| Sbjct 1086994 CCGTATGATTACCACAACGGACACATTACAAGATATTAATTCCGATAATTATGATTTCAT 1086935 Query 8616 GTATCAGAGTTCTATACTGTTTTCTCAGATAACAGTGGGAGAGCTCCATGATAATAGGTT 8675 ||||||||||| ||| | ||| | ||||| || | ||||| | ||||| | | Sbjct 1086934 GTATCAGAGTTTGATAATATTTGCACAGATTACTGCAGGAGAATTGTATGATGAATCTAT 1086875 Query 8676 TAATAGTGGAATTTATCATACTCATATCAACTGTG 8710 | | || ||||| ||| |||||||| |||| Sbjct 1086874 CACTCAAGGGATTTACCATTTCCATATCAATTGTG 1086840 >seq4 Length=16106798 Score = 91.5 bits (100), Expect = 1e-14 Identities = 215/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 8310 ATGGGAGAGAGAAAGTAAAATCCCGTTGATTAAGAGAGC-AGCAAAATTAAGAAATGTAA 8368 |||||||| ||||| |||||||| || | || ||||| ||||| | | | | || Sbjct 6854031 ATGGGAGAAAGAAACCAAAATCCCTTTATTAAAAAGAGCTAGCAAGCTGAGGGACACTAT 6853972 Query 8369 TACATTGGTTTGTGGAGCCAAATACAAATTTAGCTCTGAGCATATTCTCCATATGTAAGG 8428 | ||||||||||| || || | | | || || | |||||||| || ||| ||| Sbjct 6853971 T-CATTGGTTTGTAGACCCTGGTTCGATGTTGGCAGTAAGCATATTTTCAATACTCGAGG 6853913 Query 8429 GATTGACTGGAGAGGAATGGGATTCAGGGACAGTAGGATTTAAGAGAACTGGATGTGGAC 8488 |||||| ||| | ||||||||| || ||||| || || || ||||||| ||||||| Sbjct 6853912 AATTGACAGGAATGACATGGGATTCTGGAACAGTCGGCTTCAAACGAACTGGTTGTGGAC 6853853 Query 8489 CTCATCGATACGCATCCTCACGT-CAGAGTGC--TGGAGGTTACAGTGCGCAATCTCCCG 8545 | ||| | || | ||| | | | ||| || ||| | || ||||| || Sbjct 6853852 CCCATAGGTA---TTATTCAAATAGACAATGCAATGCAGGATTTGCGGCCCAATCGCCTT 6853796 Query 8546 CTAAATTGACTAGGATGACTACAACCACTGATACGATGGGATCCATAAATGAAGATAATT 8605 | || || ||| | |||| ||||| || || || | | || || ||||||| Sbjct 6853795 CAAAGTTAACTCGCATGATCACAACGACGGACACTTTAAAAGAAATCAACTCGGATAATT 6853736 Query 8606 ATGATTTCATGTATCAGAG 8624 ||||||||||||| ||||| Sbjct 6853735 ATGATTTCATGTAACAGAG 6853717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36146200846208