Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq40 147 2e-31 >seq40 Length=949583 Score = 147 bits (162), Expect = 2e-31 Identities = 592/925 (64%), Gaps = 12/925 (1%) Strand=Plus/Plus Query 8045 AGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATA 8104 |||| | |||||||| ||||| |||| || ||||| ||||||||||| || || || Sbjct 1658 AGGAAGATTCTTTTCTCTAATGAGTTGGCGACTAAGAGAGTATTTTGTAATTACGGAGTA 1717 Query 8105 TCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTTAGT 8164 | | || ||| |||||| || ||||| | || | |||||||| ||||| ||| Sbjct 1718 TTTAATTAAATAACATTATGTTCCCCTTTTCAAAGGGATTACAATGGCAGATGATTTAAC 1777 Query 8165 TACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGATGT 8224 ||| | | | ||| |||| || || ||||| || ||||| ||| | | || | | Sbjct 1778 AACTTTGACAAAGAAATTGCTGGATACTTCATCAGGTCAAGGTCTGGCTGACTACGGGAT 1837 Query 8225 GATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAGCCTC 8284 |||| | | || ||| | || |||||||| ||||||||| ||| ||| || || Sbjct 1838 CATCTCTATAGCTAATGATATAGATTATGAAAAATGGAATGCCCATCAAAGAGGAG-AGG 1896 Query 8285 GACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATTTACAG 8344 || | |||| | ||||| |||||||| |||| || || | || || ||||| || Sbjct 1897 GAACGATCCTTTTTTTAAAGTGATGGGCAAATTTTTAGGATTGCCAAACTTAATCGTAAG 1956 Query 8345 AACACACGAATTTTTTGAGAAAAGCCTGATTTATTATGGATATTATCCAGA--ATTATTG 8402 ||| || ||||| ||| | |||| | | |||||| | || || ||| || Sbjct 1957 AACGCATGAATTCTTTAATAAAATTATATTCTATTATAATCAAAGACCTGACTTTTAATG 2016 Query 8403 AGTGTTGTAAATGGGGAAGTTGCAAATAATTCTGATAAACGAGTGTGCTGGAATGGCCAG 8462 | |||| |||||| | ||| |||| | | | || ||||||||||| ||| Sbjct 2017 ATTGTTCGAAATGGTCGAATTGAAAATTCTACACGGCATATCGTATGCTGGAATGGTCAG 2076 Query 8463 -GCAGGAGGGCTGGAAGGGTTACGTCAGAAGGGATGGAGCATTTTAAACTTATTGGTAAT 8521 | ||| || | |||||| | | || |||||| || | | || ||||| ||| Sbjct 2077 TGTAGGGGGCCAAGAAGGGATTAGGCAACGAGGATGGTGCGTGGTCAATGCATTGGCAAT 2136 Query 8522 TAGGAGAGAAGGAGCTCATCGAAATACACAAGTGAGATGTCTAGCTCAAGGAGACAATCA 8581 || ||| | ||| || || |||| || | | || ||||| || || || Sbjct 2137 AGAAAGGGAAAGTCAAGATCAGAACACCAAAGTAAGCCTTTTGGCACAAGGGGATAACCA 2196 Query 8582 GGTTATCTGCACCTTATACAAACTTCAGAAATATCGAACACAAGAGGAACTCCAAGAAAA 8641 |||||| || ||| || | | ||||||||| ||||| || || || | | || Sbjct 2197 GGTTATATGTACCAATTATGTATTGCAGAAATATAGAACAGAACGTGAGCTACTAATCAA 2256 Query 8642 CATCCAGCGGGTGGTTGATAATAATAATGTGATATTAAATAGAATTATCAAAGGAACTGA 8701 ||| | || || || |||||| | ||| | || |||| | ||||||| | Sbjct 2257 CATTGGTAGAGTAGTGGAAAATAATTCAGAGATCATGCATCGAATAGTGAAAGGAATTAT 2316 Query 8702 GAGATTAGGATTGATTATAAATAGAGATGAAACAATGCAAAGTGCTGATTACCTGAATTA 8761 | ||||| || | ||| ||| || |||| || || || ||||| | ||| Sbjct 2317 TAAGTTAGGTTTAAGTATCAATTATGACGAAATCATTCAGTCGGCAGATTATATCTTTTA 2376 Query 8762 TGGCAAGATTCCCTTCTTTAGGGGGAATTTGAGAAATCTTGAAACCAAACGATGGTCTAG 8821 ||| || || ||| | |||| ||| | | | | ||||||||||| || ||||| Sbjct 2377 TGGAAAAATCCCCATAGTTAGATAAAATATAATGGTTTTAGAAACCAAACGGTGATCTAG 2436 Query 8822 --AGTCACTTGCGTCACCAATGATCAAATTCCAACTTTGGCAAACGTGATGTCTTCAGTT 8879 ||| || || | |||||||| || ||| | | || || || || || | Sbjct 2437 TTGTTCAATT-AGT-GCTAATGATCAGATGCCATTTAATGGTAATGTTATCTCAACAATA 2494 Query 8880 ACAACAAATGCATTAACAGTGGCCCATTATTCAGACAATCCTCTAAACACAATATTT--- 8936 | ||||||||||| | || ||| |||| | | || | || || ||| || Sbjct 2495 GGTTCTAATGCATTAACTATTGCTCATCATTCGGTCTCCCCAATTAATACCATAATTAAT 2554 Query 8937 -CATTTTAATTTCCTCGGGAATTTT 8960 |||| |||||| | ||||||||| Sbjct 2555 ACATTATAATTTTGTTGGGAATTTT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41483653308272